ViennaRNA-2.5.1
checks.aarch64-linux.ViennaRNA
· build #1
· raw
1elastic-arm-0f89b4f7: building wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv
unpackPhase
2unpacking sources3unpacking source archive /nix/store/mxbfkn8wrd1g1qpifs1s2c3knhrgrc9v-ViennaRNA-2.5.1.tar.gz4source root is ViennaRNA-2.5.15setting SOURCE_DATE_EPOCH to timestamp 1654156553 of file ViennaRNA-2.5.1/src/RNAforester/g2-0.72/src/g2_virtual_device.hpatchPhase
6patching sourcesupdateAutotoolsGnuConfigScriptsPhase
7updateAutotoolsGnuConfigScriptsPhase8Updating Autotools / GNU config script to a newer upstream version: ./config/config.sub9Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.sub10Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.sub11Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.sub12Updating Autotools / GNU config script to a newer upstream version: ./config/config.guess13Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.guess14Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.guess15Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.guessconfigurePhase
16configuring17fixing libtool script ./config/ltmain.sh18./configure19configure flags: --disable-static --disable-dependency-tracking --prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 --with-cluster --with-kinwalker20checking for gcc... gcc21checking whether the C compiler works... yes22checking for C compiler default output file name... a.out23checking for suffix of executables... 24checking whether we are cross compiling... no25checking for suffix of object files... o26checking whether the compiler supports GNU C... yes27checking whether gcc accepts -g... yes28checking for gcc option to enable C11 features... none needed29checking whether gcc understands -c and -o together... yes30checking for stdio.h... yes31checking for stdlib.h... yes32checking for string.h... yes33checking for inttypes.h... yes34checking for stdint.h... yes35checking for strings.h... yes36checking for sys/stat.h... yes37checking for sys/types.h... yes38checking for unistd.h... yes39checking for wchar.h... yes40checking for minix/config.h... no41checking whether it is safe to define __EXTENSIONS__... yes42checking whether _XOPEN_SOURCE should be defined... no43checking whether make supports nested variables... yes44checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c45checking whether build environment is sane... yes46checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p47checking for gawk... gawk48checking whether make sets $(MAKE)... yes49checking whether make supports the include directive... yes (GNU style)50checking whether UID '1000' is supported by ustar format... yes51checking whether GID '100' is supported by ustar format... yes52checking how to create a ustar tar archive... gnutar53checking dependency style of gcc... none54checking if malloc debugging is wanted... no55checking build system type... aarch64-unknown-linux-gnu56checking host system type... aarch64-unknown-linux-gnu57checking whether the compiler supports GNU C++... yes58checking whether g++ accepts -g... yes59checking for g++ option to enable C++11 features... none needed60checking dependency style of g++... none61checking how to run the C++ preprocessor... g++ -E62checking for gcc... (cached) gcc63checking whether the compiler supports GNU C... (cached) yes64checking whether gcc accepts -g... (cached) yes65checking for gcc option to enable C11 features... (cached) none needed66checking whether gcc understands -c and -o together... (cached) yes67checking how to run the C preprocessor... gcc -E68checking the archiver (ar) interface... ar69checking whether make sets $(MAKE)... (cached) yes70checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep71checking for a sed that does not truncate output... /nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin/sed72checking for gawk... (cached) gawk73checking whether ln -s works... yes74checking how to print strings... printf75checking for a sed that does not truncate output... (cached) /nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin/sed76checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E77checking for fgrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -F78checking for ld used by gcc... ld79checking if the linker (ld) is GNU ld... yes80checking for BSD- or MS-compatible name lister (nm)... nm81checking the name lister (nm) interface... BSD nm82checking the maximum length of command line arguments... 157286483checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop84checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop85checking for ld option to reload object files... -r86checking for file... file87checking for objdump... objdump88checking how to recognize dependent libraries... (cached) pass_all89checking for dlltool... no90checking how to associate runtime and link libraries... printf %s\n91checking for archiver @FILE support... @92checking for strip... strip93checking for ranlib... ranlib94checking command to parse nm output from gcc object... ok95checking for sysroot... no96checking for a working dd... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/dd97checking how to truncate binary pipes... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/dd bs=4096 count=198checking for mt... no99checking if : is a manifest tool... no100checking for dlfcn.h... yes101checking for objdir... .libs102checking if gcc supports -fno-rtti -fno-exceptions... no103checking for gcc option to produce PIC... -fPIC -DPIC104checking if gcc PIC flag -fPIC -DPIC works... yes105checking if gcc static flag -static works... no106checking if gcc supports -c -o file.o... yes107checking if gcc supports -c -o file.o... (cached) yes108checking whether the gcc linker (ld) supports shared libraries... yes109checking whether -lc should be explicitly linked in... no110checking dynamic linker characteristics... GNU/Linux ld.so111checking how to hardcode library paths into programs... immediate112checking whether stripping libraries is possible... yes113checking if libtool supports shared libraries... yes114checking whether to build shared libraries... yes115checking whether to build static libraries... no116checking how to run the C++ preprocessor... g++ -E117checking for ld used by g++... ld118checking if the linker (ld) is GNU ld... yes119checking whether the g++ linker (ld) supports shared libraries... yes120checking for g++ option to produce PIC... -fPIC -DPIC121checking if g++ PIC flag -fPIC -DPIC works... yes122checking if g++ static flag -static works... no123checking if g++ supports -c -o file.o... yes124checking if g++ supports -c -o file.o... (cached) yes125checking whether the g++ linker (ld) supports shared libraries... yes126checking dynamic linker characteristics... (cached) GNU/Linux ld.so127checking how to hardcode library paths into programs... immediate128checking for exp in -lm... yes129./configure: line 19107: #include: command not found130checking for egrep... (cached) /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E131checking for _Bool... yes132checking for stdbool.h that conforms to C99... yes133checking for malloc.h... yes134checking for float.h... yes135checking for limits.h... yes136checking for stdlib.h... (cached) yes137checking for string.h... (cached) yes138checking for strings.h... (cached) yes139checking for unistd.h... (cached) yes140checking for math.h... yes141checking for stdarg.h... yes142checking for GNU libc compatible malloc... yes143checking for GNU libc compatible realloc... yes144checking for working strtod... yes145checking for floor... yes146checking for strdup... yes147checking for strstr... yes148checking for strchr... yes149checking for strrchr... yes150checking for strstr... (cached) yes151checking for strtol... yes152checking for strtoul... yes153checking for pow... yes154checking for rint... yes155checking for sqrt... yes156checking for erand48... yes157checking for memset... yes158checking for memmove... yes159checking for erand48... (cached) yes160checking for asprintf... yes161checking for vasprintf... yes162checking for an ANSI C-conforming const... yes163checking for size_t... yes164checking for inline... inline165checking for pdflatex... no166checking for bibtex... no167checking for makeindex... no168checking for pkg-config... no169checking for C compiler vendor... gnu170checking for perl... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl171checking whether C compiler accepts -fno-strict-aliasing... yes172checking whether C++ compiler accepts -fno-strict-aliasing... yes173checking whether the linker accepts -fno-strict-aliasing... yes174checking whether the C compiler allows unnamed unions of unnamed structs... yes175checking whether the C++ compiler allows unnamed unions of unnamed structs... yes176checking whether C compiler accepts -flto... yes177checking whether C++ compiler accepts -flto... yes178checking whether C compiler accepts -ffat-lto-objects... yes179checking whether C++ compiler accepts -ffat-lto-objects... yes180configure: WARNING: Trying to re-set ar/ranlib/nm to compiler specific wrappers181checking for gcc-ar... gcc-ar182checking for gcc-ranlib... gcc-ranlib183checking for gcc-nm... gcc-nm184checking whether the linker supports Link time Optimization (LTO)... yes185checking for ./src/libsvm-3.25/svm.cpp... yes186checking for ./src/libsvm-3.25/svm.h... yes187checking for ./src/json/json.c... yes188checking for ./src/json/json.h... yes189checking for cblas_dgemm in -lgslcblas... yes190checking for gsl_blas_dgemm in -lgsl... yes191checking for OpenMP flag of C compiler... -fopenmp192checking for OpenMP flag of C++ compiler... -fopenmp193checking whether gcc is Clang... no194checking whether pthreads work with "-pthread" and "-lpthread"... yes195checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE196checking whether more special flags are required for pthreads... no197checking for PTHREAD_PRIO_INHERIT... yes198checking compiler support for AVX 512 instructions... no199checking compiler support for SSE 4.1 instructions... no200checking whether C compiler accepts -ftree-vectorize... yes201checking for mpfr.h... yes202checking whether we can compile programs with mpfr support... yes203checking for ./src/ViennaRNA/plotting/naview/naview.c... yes204checking for ./src/ViennaRNA/plotting/naview/naview.h... yes205checking for ./interfaces/Makefile.am... yes206checking for swig... no207checking for swig2.0... no208checking for ./interfaces/Perl/Makefile.am... yes209checking for ./interfaces/Perl/RNA_wrap.cpp... yes210checking for ./interfaces/Perl/RNA.pm... yes211checking for /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl... (cached) /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl212checking for Perl prefix... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0213checking for Perl siteprefix... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0214checking for Perl vendorprefix... 215checking for Perl extension include path... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/5.36.0/aarch64-linux-thread-multi/CORE216checking for Perl extension target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi217checking for architecture dependent Perl extension site target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi218checking for architecture dependent Perl extension vendor target directory... 219checking for architecture independent Perl extension site target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0220checking for architecture independent Perl extension vendor target directory... 221checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/no-such-path/include222checking for Perl extensions linker flags... -shared -O2 -L/nix/store/hc3db8k7svnz6zyhhqx8srjabkb6ij1q-glibc-2.35-224/lib -fstack-protector-strong223checking for Perl dynamic library extension... .so224checking for ./interfaces/Python2/Makefile.am... yes225checking for ./interfaces/Python2/RNA_wrap.cpp... yes226checking for ./interfaces/Python2/RNA.py... yes227checking for python2... no228checking for python2.7... no229checking for python2.6... no230checking for ./interfaces/Python/Makefile.am... yes231checking for ./interfaces/Python/RNA_wrap.cpp... yes232checking for ./interfaces/Python/RNA.py... yes233checking for python3... /nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin/python3234checking for Python3 include path... <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives235<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead236/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/include/python3.10237checking for /nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/include/python3.10/Python.h... yes238checking for Python3 ldflags... 239checking for Python3 extension linker... <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives240<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead241gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.5.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.9/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.4/lib -L/nix/store/x1yyrplgldzg8hvbaz5za8v0vs6ig1yp-libxcrypt-4.4.33/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.23/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.40.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.1p2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.3-p20220507/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.0.7/lib -L/nix/store/ni761n3nvd0i6gy8nh8h3apjbvq9svdn-tzdata-2022g/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.5.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.9/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.4/lib -L/nix/store/x1yyrplgldzg8hvbaz5za8v0vs6ig1yp-libxcrypt-4.4.33/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.23/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.40.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.1p2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.3-p20220507/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.0.7/lib -L/nix/store/ni761n3nvd0i6gy8nh8h3apjbvq9svdn-tzdata-2022g/lib242checking for directory to install Python3 scripts in... <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives243<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead244${prefix}/lib/python3.10/site-packages245checking for directory to install architecture dependent python3 things in... <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives246<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead247${exec_prefix}/lib/python3.10/site-packages248checking for Python3 module extension... <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives249<string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead250.cpython-310-aarch64-linux-gnu.so251checking for Python3 tag for cached compiled scripts... cpython-310252checking for Python3 extension of cached and optimized bytecode... cpython-310.opt-1.pyc253checking for doxygen... no254checking for dot... no255checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/egrep256checking for perl... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl257checking for doc/RNAlib-2.5.1.pdf... yes258checking for doc/html/index.html... yes259checking for htlatex... no260configure: WARNING: Could not find pdflatex!261configure: WARNING: deactivating automatic (re)generation of tutorial!262checking for RNA-Tutorial/RNA-tutorial-2.5.1.pdf... yes263configure: WARNING: Could not find pdflatex!264configure: WARNING: deactivating automatic (re)generation of CLA!265checking for doc/CLA/ViennaRNA-CLA-Individual.pdf... yes266checking for doc/CLA/ViennaRNA-CLA-Entity.pdf... yes267checking for CHECK... no268configure: WARNING: check not found -- will not build C-library Unit tests269checking for diff... /nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin/diff270checking for xxd... no271checking for gengetopt... no272checking for help2man... no273checking for ./src/ViennaRNA/static/postscript/structure_plot_macro_base.hex... yes274checking for ./src/ViennaRNA/static/postscript/structure_plot_macro_extras.hex... yes275checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_base.hex... yes276checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_turn.hex... yes277checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_sd.hex... yes278checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_ud.hex... yes279checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_sc_motifs.hex... yes280checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_linear_data.hex... yes281checking for ./src/ViennaRNA/static/postscript/aln_macro_base.hex... yes282checking for ./src/ViennaRNA/static/svg/structure_plot_header.hex... yes283checking for ./src/ViennaRNA/static/svg/structure_plot_footer.hex... yes284checking for ./src/ViennaRNA/static/misc/dna_mathews1999.hex... yes285checking for ./src/ViennaRNA/static/misc/dna_mathews2004.hex... yes286checking for ./src/ViennaRNA/static/misc/rna_andronescu2007.hex... yes287checking for ./src/ViennaRNA/static/misc/rna_langdon2018.hex... yes288checking for ./src/ViennaRNA/static/misc/rna_misc_special_hairpins.hex... yes289checking for ./src/ViennaRNA/static/misc/rna_turner1999.hex... yes290checking for ./src/ViennaRNA/static/misc/rna_turner2004.hex... yes291checking whether g++ supports C++11 features with -std=c++11... yes292checking for ./src/dlib-19.23/dlib/all/source.cpp... yes293checking for ./src/Kinfold/Makefile.am... yes294checking for ./src/RNAforester/Makefile.am... yes295checking for ./src/Cluster/Makefile.am... yes296checking for ./src/Kinwalker/Makefile.am... yes297checking for ./src/RNAlocmin/Makefile.am... yes298checking that generated files are newer than configure... done299configure: creating ./config.status300config.status: creating packaging/macosx/Makefile301config.status: creating packaging/macosx/Distribution.xml302config.status: creating packaging/macosx/resources/welcome.txt303config.status: creating src/ViennaRNA/plotting/naview/Makefile304config.status: creating interfaces/Perl/Makefile305config.status: creating interfaces/Perl/version.i306config.status: creating interfaces/Python/Makefile307config.status: creating interfaces/Python/version.i308config.status: creating tests/Makefile309config.status: creating tests/RNApath.py310config.status: creating tests/RNAHelpers.pm311config.status: creating tests/test-env.sh312config.status: creating src/ViennaRNA/static/templates_postscript.h313config.status: creating src/ViennaRNA/static/templates_svg.h314config.status: creating src/ViennaRNA/static/energy_parameter_sets.h315config.status: creating src/Cluster/Makefile316config.status: creating src/ViennaRNA/vrna_config.h317config.status: creating misc/Makefile318config.status: creating interfaces/Makefile319config.status: creating Makefile320config.status: creating RNAlib2.pc321config.status: creating src/Utils/Makefile322config.status: creating src/bin/Makefile323config.status: creating src/Makefile324config.status: creating src/ViennaRNA/Makefile325config.status: creating src/ViennaRNA/static/Makefile326config.status: creating man/Makefile327config.status: creating doc/Makefile328config.status: creating doc/CLA/Makefile329config.status: creating RNA-Tutorial/Makefile330config.status: creating man/cmdlopt.sh331config.status: creating examples/Makefile332config.status: creating packaging/viennarna.spec333config.status: creating packaging/PKGBUILD334config.status: creating packaging/win_installer_archlinux_i686.nsi335config.status: creating packaging/win_installer_archlinux_x86_64.nsi336config.status: creating packaging/win_installer_fedora_i686.nsi337config.status: creating packaging/win_installer_fedora_x86_64.nsi338config.status: creating config.h339config.status: executing depfiles commands340config.status: executing libtool commands341=== configuring in src/Kinfold (/build/ViennaRNA-2.5.1/src/Kinfold)342configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=.343checking whether make supports nested variables... yes344checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c345checking whether build environment is sane... yes346checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p347checking for gawk... gawk348checking whether make sets $(MAKE)... yes349checking if malloc debugging is wanted... no350checking for gcc... gcc351checking whether the C compiler works... yes352checking for C compiler default output file name... a.out353checking for suffix of executables... 354checking whether we are cross compiling... no355checking for suffix of object files... o356checking whether the compiler supports GNU C... yes357checking whether gcc accepts -g... yes358checking for gcc option to enable C11 features... none needed359checking whether gcc understands -c and -o together... yes360checking whether make supports the include directive... yes (GNU style)361checking dependency style of gcc... none362checking build system type... aarch64-unknown-linux-gnu363checking host system type... aarch64-unknown-linux-gnu364checking for strdup... yes365checking for memset... yes366checking for strchr... yes367checking for pkg-config... no368checking for VRNA... yes369checking for stdio.h... yes370checking for stdlib.h... yes371checking for string.h... yes372checking for inttypes.h... yes373checking for stdint.h... yes374checking for strings.h... yes375checking for sys/stat.h... yes376checking for sys/types.h... yes377checking for unistd.h... yes378./configure: line 4958: #include: command not found379checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep380checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E381checking for stdlib.h... (cached) yes382checking for string.h... (cached) yes383checking for strings.h... (cached) yes384checking for unistd.h... (cached) yes385checking for exp in -lm... yes386checking for an ANSI C-conforming const... yes387checking that generated files are newer than configure... done388configure: creating ./config.status389config.status: creating Example/Makefile390config.status: creating Makefile391config.status: creating config.h392config.status: executing depfiles commands393=== configuring in src/RNAforester (/build/ViennaRNA-2.5.1/src/RNAforester)394configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=.395checking whether make supports nested variables... yes396checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c397checking whether build environment is sane... yes398checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p399checking for gawk... gawk400checking whether make sets $(MAKE)... yes401checking whether the C++ compiler works... yes402checking for C++ compiler default output file name... a.out403checking for suffix of executables... 404checking whether we are cross compiling... no405checking for suffix of object files... o406checking whether the compiler supports GNU C++... yes407checking whether g++ accepts -g... yes408checking for g++ option to enable C++11 features... none needed409checking whether make supports the include directive... yes (GNU style)410checking dependency style of g++... none411checking for gcc... gcc412checking whether the compiler supports GNU C... yes413checking whether gcc accepts -g... yes414checking for gcc option to enable C11 features... none needed415checking whether gcc understands -c and -o together... yes416checking dependency style of gcc... none417checking for flex... no418checking for lex... no419checking for bison... no420checking for byacc... no421checking for g++ option to support OpenMP... -fopenmp422checking for pkg-config... no423checking for VRNA... yes424checking for stdio.h... yes425checking for stdlib.h... yes426checking for string.h... yes427checking for inttypes.h... yes428checking for stdint.h... yes429checking for strings.h... yes430checking for sys/stat.h... yes431checking for sys/types.h... yes432checking for unistd.h... yes433./configure: line 5995: #include: command not found434checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep435checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E436checking for g2.h... yes437checking for an ANSI C-conforming const... yes438checking for inline... inline439checking for size_t... yes440checking that generated files are newer than configure... done441configure: creating ./config.status442config.status: creating Makefile443config.status: creating src/Makefile444config.status: creating man/Makefile445config.status: creating config.h446config.status: executing depfiles commands447=== configuring in g2-0.72 (/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72)448configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=.449checking build system type... aarch64-unknown-linux-gnu450checking host system type... aarch64-unknown-linux-gnu451checking for gcc... gcc452checking whether the C compiler works... yes453checking for C compiler default output file name... a.out454checking for suffix of executables... 455checking whether we are cross compiling... no456checking for suffix of object files... o457checking whether the compiler supports GNU C... yes458checking whether gcc accepts -g... yes459checking for gcc option to enable C11 features... none needed460checking how to run the C preprocessor... gcc -E461checking whether the compiler supports GNU C++... yes462checking whether g++ accepts -g... yes463checking for g++ option to enable C++11 features... none needed464checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c465checking for find... find466checking for makedepend... :467checking for dlopen in -ldl... yes468checking for X... no469checking for main in -lm... yes470checking for main in -lX11... no471checking for main in -lXext... no472checking for main in -lgd... no473checking for stdio.h... yes474checking for stdlib.h... yes475checking for string.h... yes476checking for inttypes.h... yes477checking for stdint.h... yes478checking for strings.h... yes479checking for sys/stat.h... yes480checking for sys/types.h... yes481checking for unistd.h... yes482./configure: line 5714: #include: command not found483checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep484checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E485checking for limits.h... yes486487configure: creating ./config.status488config.status: creating Makefile489config.status: creating demo/Makefile490config.status: creating g2_perl/Makefile.PL491config.status: creating g2_python/Makefile492493Supported devices:494 PostScript495 FIG496497Unsupported devices:498 X11499 Xdbe500 Win32501 GD502 GD (GIF)503504Run 'make depend' to create dependencies.505506=== configuring in src/Kinwalker (/build/ViennaRNA-2.5.1/src/Kinwalker)507configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=.508checking whether make supports nested variables... yes509checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c510checking whether build environment is sane... yes511checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p512checking for gawk... gawk513checking whether make sets $(MAKE)... yes514checking whether the C++ compiler works... yes515checking for C++ compiler default output file name... a.out516checking for suffix of executables... 517checking whether we are cross compiling... no518checking for suffix of object files... o519checking whether the compiler supports GNU C++... yes520checking whether g++ accepts -g... yes521checking for g++ option to enable C++11 features... none needed522checking whether make supports the include directive... yes (GNU style)523checking dependency style of g++... none524checking for gcc... gcc525checking whether the compiler supports GNU C... yes526checking whether gcc accepts -g... yes527checking for gcc option to enable C11 features... none needed528checking whether gcc understands -c and -o together... yes529checking dependency style of gcc... none530checking for stdio.h... yes531checking for stdlib.h... yes532checking for string.h... yes533checking for inttypes.h... yes534checking for stdint.h... yes535checking for strings.h... yes536checking for sys/stat.h... yes537checking for sys/types.h... yes538checking for unistd.h... yes539checking for malloc.h... yes540checking for strings.h... (cached) yes541checking for unistd.h... (cached) yes542checking for inline... inline543checking for pkg-config... no544checking for VRNA... yes545checking that generated files are newer than configure... done546configure: creating ./config.status547config.status: creating Makefile548config.status: creating man/Makefile549config.status: creating config.h550config.status: executing depfiles commands551=== configuring in src/RNAlocmin (/build/ViennaRNA-2.5.1/src/RNAlocmin)552configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=.553checking for gcc... gcc554checking whether the C compiler works... yes555checking for C compiler default output file name... a.out556checking for suffix of executables... 557checking whether we are cross compiling... no558checking for suffix of object files... o559checking whether the compiler supports GNU C... yes560checking whether gcc accepts -g... yes561checking for gcc option to enable C11 features... none needed562checking whether gcc understands -c and -o together... yes563checking for stdio.h... yes564checking for stdlib.h... yes565checking for string.h... yes566checking for inttypes.h... yes567checking for stdint.h... yes568checking for strings.h... yes569checking for sys/stat.h... yes570checking for sys/types.h... yes571checking for unistd.h... yes572checking for wchar.h... yes573checking for minix/config.h... no574checking whether it is safe to define __EXTENSIONS__... yes575checking whether _XOPEN_SOURCE should be defined... no576checking whether make supports nested variables... yes577checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c578checking whether build environment is sane... yes579checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p580checking for gawk... gawk581checking whether make sets $(MAKE)... yes582checking whether make supports the include directive... yes (GNU style)583checking dependency style of gcc... none584checking build system type... aarch64-unknown-linux-gnu585checking host system type... aarch64-unknown-linux-gnu586checking whether the compiler supports GNU C++... yes587checking whether g++ accepts -g... yes588checking for g++ option to enable C++11 features... none needed589checking dependency style of g++... none590checking how to run the C++ preprocessor... g++ -E591checking for gcc... (cached) gcc592checking whether the compiler supports GNU C... (cached) yes593checking whether gcc accepts -g... (cached) yes594checking for gcc option to enable C11 features... (cached) none needed595checking whether gcc understands -c and -o together... (cached) yes596checking how to run the C preprocessor... gcc -E597checking whether g++ supports C++11 features by default... yes598checking for strchr... yes599checking for strdup... yes600checking for strtol... yes601checking for limits.h... yes602checking for _Bool... yes603checking for stdbool.h that conforms to C99... yes604checking for inline... inline605checking for GNU libc compatible malloc... yes606checking for GNU libc compatible realloc... yes607checking for working strtod... yes608checking for size_t... yes609checking for pkg-config... no610checking for VRNA... yes611checking that generated files are newer than configure... done612configure: creating ./config.status613config.status: creating Makefile614config.status: creating config.h615config.status: executing depfiles commands616configure:617618======================================619 ViennaRNA Package 2.5.1620======================================621622Successfully configured with the following options:623624Sub Packages625------------626 * Kinfold : yes627 * RNAforester : yes628 * Analyse{Dists,Seqs} : yes629 * RNAlocmin : yes630 * Kinwalker : yes631632Extra Libraries633---------------634 * Support Vector Machine : yes635 * GNU Scientific Library : yes636 * GNU MPFR : yes637 * JSON : yes638639Features640--------641 * Use hash for NR Sampling : no642 * C11 features : yes643 * TTY colors : yes644 * Float Precision(PF} : no645 * Deprecation Warnings : no646647Optimizations648-------------649 * Auto Vectorization : yes650 * Explicit SIMD Extension : yes 651 * Link Time Optimization : yes652 * POSIX Threads : yes653 * OpenMP : yes654655Scripting Language Interfaces656-----------------------------657 * Perl 5 : yes658 * Python 3.x : yes659 * Python 2.x : no660661Documentation662-------------663 * Reference Manual (PDF) : yes 664 * Reference Manual (HTML) : yes 665 * Tutorial (PDF) : yes 666 * Tutorial (HTML) : no 667 * CLA (PDF) : yes 668669Unit Tests670----------671 * Executable Programs : yes672 * C-Library : no673 * Perl 5 Interface : yes674 * Python 3.x Interface : yes675 * Python 2.x Interface : no676677MacOS X678-------679 * Universal Binary : no680 * Installer : no681 * SDK : no682683Install Directories684-------------------685 * Executables : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin686 * Libraries : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib687 * Header files : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include688 * Extra Data : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share689 * Man pages : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man690 * Documentation : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA691 (HTML) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html692 (PDF) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA693 * Perl5 Interface : 694 (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi695 (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0696 * Python 3.x Interface : 697 (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages698 (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages699 * Python 2.x Interface : Not to be installed python2 executable missing700 (binaries) : 701 (scripts) : 702703You can run 'make', 'make check', and 'make install' now!buildPhase
704building705build flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash706make all-recursive707make[1]: Entering directory '/build/ViennaRNA-2.5.1'708Making all in src709make[2]: Entering directory '/build/ViennaRNA-2.5.1/src'710Making all in ViennaRNA711make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'712Making all in static713make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'714make all-am715make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'716make[5]: Nothing to be done for 'all-am'.717make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'718make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'719Making all in plotting/naview720make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'721 CC naview.lo722 CCLD libRNA_naview.la723make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'724make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'725 CC fold_compound.lo726 CC dist_vars.lo727 CC part_func.lo728 CC part_func_wrappers.lo729 CC pf_fold.lo730 CC pf_multifold.lo731 CC treedist.lo732 CC inverse.lo733 CC ProfileDist.lo734 CC RNAstruct.lo735 CC mfe.lo736 CC mfe_window.lo737 CC mfe_wrappers.lo738 CC mfe_window_wrappers.lo739 CC fold.lo740 CC stringdist.lo741 CC subopt.lo742 CC subopt_zuker.lo743 CC Lfold.lo744 CC cofold.lo745 CC part_func_co.lo746 CC ProfileAln.lo747 CC duplex.lo748 CC alifold.lo749 CC alipfold.lo750 CC LPfold.lo751 CC part_func_up.lo752 CC ribo.lo753 CC MEA.lo754 CC mm.lo755 CC 2Dfold.lo756 CC 2Dpfold.lo757 CC plex_functions.lo758 CC ali_plex.lo759 CC c_plex.lo760 CC plex.lo761 CC snofold.lo762 CC snoop.lo763 CC gquad.lo764 CC perturbation_fold.lo765 CC centroid.lo766 CC model.lo767 CC dp_matrices.lo768 CC boltzmann_sampling.lo769 CC bs_wrappers.lo770 CC equilibrium_probs.lo771 CXX ../libsvm-3.25/svm.lo772 CC ../json/json.lo773 CC alphabet.lo774 CC sequence.lo775 CC unstructured_domains.lo776 CC grammar.lo777 CC heat_capacity.lo778 CC zscore.lo779 CC libRNA_concentrations_la-concentrations.lo780 CXX ../dlib-19.23/dlib/all/libRNA_concentrations_la-source.lo781 CXX libRNA_concentrations_la-wrap_dlib.lo782 CXXLD libRNA_concentrations.la783 CC constraints/constraints.lo784 CC constraints/SHAPE.lo785 CC constraints/hard.lo786 CC constraints/soft.lo787 CC constraints/ligand.lo788 CCLD libRNA_constraints.la789 CC datastructures/basic_datastructures.lo790 CC datastructures/lists.lo791 CC datastructures/char_stream.lo792 CC datastructures/stream_output.lo793 CC datastructures/hash_tables.lo794 CC datastructures/heap.lo795 CCLD libRNA_datastructures.la796 CC utils/utils.lo797 CC utils/string_utils.lo798 CC utils/structure_utils.lo799 CC utils/structure_tree.lo800 CC utils/msa_utils.lo801 CC utils/higher_order_functions.lo802 CC utils/cpu.lo803 CC utils/units.lo804 CC io/io_utils.lo805 CC io/file_formats.lo806 CC io/file_formats_msa.lo807 CC search/BoyerMoore.lo808 CC commands.lo809 CC combinatorics.lo810 CC utils/svm_utils.lo811 CCLD libRNA_utils.la812 CC plotting/alignments.lo813 CC plotting/layouts.lo814 CC plotting/probabilities.lo815 CC plotting/structures.lo816 CC plotting/plot_utils.lo817 CC plotting/RNApuzzler/RNApuzzler.lo818 CC plotting/RNApuzzler/RNAturtle.lo819 CCLD libRNA_plotting.la820 CC params/io.lo821 CC params/default.lo822 CC params/params.lo823 CC params/convert.lo824 CCLD libRNA_params.la825 CC eval.lo826 CC eval_covariance.lo827 CC eval_wrappers.lo828 CCLD libRNA_eval.la829 CC loops/external.lo830 CC loops/external_bt.lo831 CC loops/external_pf.lo832 CC loops/hairpin.lo833 CC loops/hairpin_bt.lo834 CC loops/hairpin_pf.lo835 CC loops/internal.lo836 CC loops/internal_bt.lo837 CC loops/internal_pf.lo838 CC loops/multibranch.lo839 CC loops/multibranch_bt.lo840 CC loops/multibranch_pf.lo841 CCLD libRNA_loops.la842 CC move_set.lo843 CC landscape/move.lo844 CC landscape/findpath.lo845 CC landscape/neighbor.lo846 CC landscape/walk.lo847 CCLD libRNA_landscape.la848 CXXLD libRNA_conv.la849 CXXLD libRNA.la850 CC special_const.lo851 CC ugly_bt.lo852 CCLD libRNA_special_const.la853 GEN libRNA.a854make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'855make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'856Making all in bin857make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin'858 CC RNAfold_cmdl.o859 CC RNAfold.o860 CC input_id_helpers.lo861 CC parallel_helpers.lo862 CC ../cthreadpool/thpool.lo863 CCLD libhelpers.la864 CCLD RNAfold865 CC RNAeval_cmdl.o866 CC RNAeval.o867 CCLD RNAeval868 CC RNAheat_cmdl.o869 CC RNAheat.o870 CCLD RNAheat871 CC RNApdist_cmdl.o872 CC RNApdist.o873 CCLD RNApdist874 CC RNAdistance_cmdl.o875 CC RNAdistance.o876 CCLD RNAdistance877 CC RNAinverse_cmdl.o878 CC RNAinverse.o879 CCLD RNAinverse880 CC RNAplot_cmdl.o881 CC RNAplot.o882 CCLD RNAplot883 CC RNAsubopt_cmdl.o884 CC RNAsubopt.o885 CCLD RNAsubopt886 CC RNALfold_cmdl.o887 CC RNALfold.o888 CCLD RNALfold889 CC RNAcofold_cmdl.o890 CC RNAcofold.o891 CCLD RNAcofold892 CC RNApaln_cmdl.o893 CC RNApaln.o894 CCLD RNApaln895 CC RNAduplex_cmdl.o896 CC RNAduplex.o897 CCLD RNAduplex898 CC RNAalifold_cmdl.o899 CC RNAalifold.o900 CCLD RNAalifold901 CC RNAplfold_cmdl.o902 CC RNAplfold.o903 CCLD RNAplfold904 CC RNAup_cmdl.o905 CC RNAup.o906 CCLD RNAup907 CC RNAaliduplex_cmdl.o908 CC RNAaliduplex.o909 CCLD RNAaliduplex910 CC RNALalifold_cmdl.o911 CC RNALalifold.o912 CCLD RNALalifold913 CC RNA2Dfold_cmdl.o914 CC RNA2Dfold.o915 CCLD RNA2Dfold916 CC RNAparconv_cmdl.o917 CC RNAparconv.o918 CCLD RNAparconv919 CC RNAPKplex_cmdl.o920 CC RNAPKplex.o921 CCLD RNAPKplex922 CC RNAplex_cmdl.o923 CC RNAplex.o924 CCLD RNAplex925 CC RNAsnoop_cmdl.o926 CC RNAsnoop.o927 CCLD RNAsnoop928 CC RNApvmin_cmdl.o929 CC RNApvmin.o930 CCLD RNApvmin931 CC RNAdos_cmdl.o932 CC RNAdos.o933 CCLD RNAdos934 CC RNAmultifold_cmdl.o935 CC RNAmultifold.o936 CCLD RNAmultifold937make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin'938Making all in Utils939make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils'940 CC b2ct.o941 CCLD b2ct942 CC popt.o943 CCLD popt944 CC ct2db_cmdl.o945 CC ct2db.o946 CCLD ct2db947make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils'948Making all in Cluster949make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster'950 CC split.o951 CC distance_matrix.o952 CC cluster.o953 CC treeplot.o954 CC AD_main.o955 CCLD AnalyseDists956 CC statgeom.o957 CC AS_main.o958 CC PS3D.o959 CCLD AnalyseSeqs960make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster'961make[3]: Entering directory '/build/ViennaRNA-2.5.1/src'962make[3]: Nothing to be done for 'all-am'.963make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src'964make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src'965Making all in man966make[2]: Entering directory '/build/ViennaRNA-2.5.1/man'967make[2]: Nothing to be done for 'all'.968make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man'969Making all in misc970make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc'971make[2]: Nothing to be done for 'all'.972make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc'973Making all in doc974make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc'975Making all in CLA976make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA'977make[3]: Nothing to be done for 'all'.978make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA'979make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc'980make[3]: Nothing to be done for 'all-am'.981make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc'982make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc'983Making all in RNA-Tutorial984make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'985make[2]: Nothing to be done for 'all'.986make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'987Making all in interfaces988make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces'989Making all in Perl990make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl'991 CXX RNA_la-RNA_wrap.lo992 CXXLD RNA.la993 GEN auto/RNA/RNA.so994make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl'995Making all in Python996make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python'997 CXX _RNA_la-RNA_wrap.lo998 CXXLD _RNA.la999 GEN RNA/__init__.py1000 GEN RNA/_RNA.cpython-310-aarch64-linux-gnu.so1001 GEN RNA/__pycache__/__init__.cpython-310.pyc1002 GEN RNA/__pycache__/__init__.cpython-310.opt-1.pyc1003make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python'1004make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces'1005make[3]: Nothing to be done for 'all-am'.1006make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces'1007make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces'1008Making all in src/Kinfold1009make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1010make all-recursive1011make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1012Making all in Example1013make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1014make[4]: Nothing to be done for 'all'.1015make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1016make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1017 CC baum.o1018 CC cache.o1019 CC globals.o1020globals.c: In function 'process_options_gg':1021globals.c:358:41: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=]1022 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g",1023 | ~^1024 | |1025 | float *1026 | %lg1027 359 | &GAV.phi_bounds[0],1028 | ~~~~~~~~~~~~~~~~~~ 1029 | |1030 | double *1031globals.c:358:44: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=]1032 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g",1033 | ~^1034 | |1035 | float *1036 | %lg1037 359 | &GAV.phi_bounds[0],1038 360 | &GAV.phi_bounds[1],1039 | ~~~~~~~~~~~~~~~~~~ 1040 | |1041 | double *1042globals.c:358:47: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=]1043 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g",1044 | ~^1045 | |1046 | float *1047 | %lg1048......1049 361 | &GAV.phi_bounds[2]) == 0)1050 | ~~~~~~~~~~~~~~~~~~ 1051 | |1052 | double *1053globals.c: In function 'process_options':1054globals.c:448:25: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=]1055 448 | if (sscanf(optarg, "%g=%g=%g",1056 | ~^1057 | |1058 | float *1059 | %lg1060 449 | &GAV.phi_bounds[0],1061 | ~~~~~~~~~~~~~~~~~~1062 | |1063 | double *1064globals.c:448:28: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=]1065 448 | if (sscanf(optarg, "%g=%g=%g",1066 | ~^1067 | |1068 | float *1069 | %lg1070 449 | &GAV.phi_bounds[0],1071 450 | &GAV.phi_bounds[1],1072 | ~~~~~~~~~~~~~~~~~~ 1073 | |1074 | double *1075globals.c:448:31: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=]1076 448 | if (sscanf(optarg, "%g=%g=%g",1077 | ~^1078 | |1079 | float *1080 | %lg1081......1082 451 | &GAV.phi_bounds[2]) == 0)1083 | ~~~~~~~~~~~~~~~~~~ 1084 | |1085 | double *1086 CC main.o1087 CC nachbar.o1088nachbar.c: In function 'sel_nb':1089nachbar.c:318:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]1090 318 | sprintf(format, "%%-%ds %%6.2f %%10.3f", strlen(GAV.farbe_full)+1);1091 | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~1092 | | |1093 | int size_t {aka long unsigned int}1094 | %ld1095 CC cmdline.o1096 CCLD Kinfold1097make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1098make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1099make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1100Making all in src/RNAforester1101make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1102make all-recursive1103make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1104Making all in g2-0.721105make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72'1106gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_device.c -o src/g2_device.o1107gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_control.c -o src/g2_ui_control.o1108gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_util.c -o src/g2_util.o1109gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_fif.c -o src/g2_fif.o1110gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_virtual_device.c -o src/g2_virtual_device.o1111gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_physical_device.c -o src/g2_physical_device.o1112gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_graphic_pd.c -o src/g2_graphic_pd.o1113gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_control_pd.c -o src/g2_control_pd.o1114gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_graphic.c -o src/g2_ui_graphic.o1115gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_virtual_device.c -o src/g2_ui_virtual_device.o1116gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_device.c -o src/g2_ui_device.o1117gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_splines.c -o src/g2_splines.o1118gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/PS/g2_PS.c -o src/PS/g2_PS.o1119gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/FIG/g2_FIG.c -o src/FIG/g2_FIG.o1120src/FIG/g2_FIG.c: In function 'g2_FIG_draw_string':1121src/FIG/g2_FIG.c:477:47: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]1122 477 | fprintf(fig->fp,"4 0 %d 1 -1 0 %d 0 5 %d %d %d %d ",1123 | ~^1124 | |1125 | int1126 | %ld1127 478 | fig->pen_color, fig->font_size, fig->font_size, fig->font_size*strlen(text), x, y);1128 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~1129 | |1130 | size_t {aka long unsigned int}1131gcc-ar cr libg2.a ./src/g2_device.o ./src/g2_ui_control.o ./src/g2_util.o ./src/g2_fif.o ./src/g2_virtual_device.o ./src/g2_physical_device.o ./src/g2_graphic_pd.o ./src/g2_control_pd.o ./src/g2_ui_graphic.o ./src/g2_ui_virtual_device.o ./src/g2_ui_device.o ./src/g2_splines.o ./src/PS/g2_PS.o ./src/FIG/g2_FIG.o1132test ! -n "gcc-ranlib" || gcc-ranlib libg2.a1133test -d ./include || mkdir ./include1134cp ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ./include/1135make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72'1136Making all in src1137make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1138make all-am1139make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1140 CXX anchors/bplex.o1141 CXX anchors/shape.o1142 CXX anchors/anchors.o1143 CXX aligner.o1144 CXX main.o1145 CXX forestbase.o1146 CXX parser.o1147 CXX progressive_align.o1148 CXX rna_profile_alignment.o1149 CXX rna_alignment.o1150 CXX rna_algebra.o1151 CXX rna_alphabet.o1152 CXX rnaforest.o1153 CXX rnafuncs.o1154 CXX frontend/Arguments.o1155 CXX frontend/rnaforester_options.o1156 CXX TED/rnaforestsz.o1157 CC wmatch/glib.o1158 CC wmatch/wmatch.o1159 CXXLD RNAforester1160make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1161make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1162Making all in man1163make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1164make[4]: Nothing to be done for 'all'.1165make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1166make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1167make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1168make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1169make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1170Making all in src/Kinwalker1171make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1172make all-recursive1173make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1174Making all in man1175make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1176make[4]: Nothing to be done for 'all'.1177make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1178make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1179 CXX main.o1180 CXX Energy.o1181 CXX MorganHiggs.o1182 CXX Node.o1183 CC options.o1184 CXX Util.o1185 CXXLD kinwalker1186make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1187make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1188make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1189Making all in src/RNAlocmin1190make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1191make all-am1192make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1193 CC RNAlocmin_cmdline.o1194 CXX barrier_tree.o1195 CXX findpath_pk.o1196 CXX flood.o1197 CXX globals.o1198 CXX hash_util.o1199 CXX main.o1200 CC move_set_inside.o1201 CXX move_set_pk.o1202 CXX neighbourhood.o1203 CXX pknots.o1204 CXX RNAlocmin.o1205 CXX treeplot.o1206 CXXLD RNAlocmin1207make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1208make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1209Making all in tests1210make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests'1211make all-am1212make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests'1213make[3]: Nothing to be done for 'all-am'.1214make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests'1215make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests'1216Making all in examples1217make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples'1218make[2]: Nothing to be done for 'all'.1219make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples'1220Making all in packaging/macosx1221make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx'1222make[2]: Nothing to be done for 'all'.1223make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx'1224make[2]: Entering directory '/build/ViennaRNA-2.5.1'1225make[2]: Leaving directory '/build/ViennaRNA-2.5.1'1226make[1]: Leaving directory '/build/ViennaRNA-2.5.1'1227buildPhase completed in 27 minutes 34 secondsinstallPhase
1228installing1229install flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash install1230Making install in src1231make[1]: Entering directory '/build/ViennaRNA-2.5.1/src'1232Making install in ViennaRNA1233make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1234Making install in static1235make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1236make install-am1237make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1238make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1239make[5]: Nothing to be done for 'install-exec-am'.1240make[5]: Nothing to be done for 'install-data-am'.1241make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1242make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1243make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static'1244Making install in plotting/naview1245make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'1246make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'1247make[4]: Nothing to be done for 'install-exec-am'.1248 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview'1249 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 naview.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview'1250make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'1251make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview'1252make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1253make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1254 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib'1255 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c libRNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib'1256libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.la1257libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.a /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a1258libtool: install: chmod 644 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a1259libtool: install: gcc-ranlib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a1260libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib1261----------------------------------------------------------------------1262Libraries have been installed in:1263 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib12641265If you ever happen to want to link against installed libraries1266in a given directory, LIBDIR, you must either use libtool, and1267specify the full pathname of the library, or use the '-LLIBDIR'1268flag during linking and do at least one of the following:1269 - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable1270 during execution1271 - add LIBDIR to the 'LD_RUN_PATH' environment variable1272 during linking1273 - use the '-Wl,-rpath -Wl,LIBDIR' linker flag12741275See any operating system documentation about shared libraries for1276more information, such as the ld(1) and ld.so(8) manual pages.1277----------------------------------------------------------------------1278 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1279 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 vrna_config.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1280 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1281 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 concentrations.h wrap_dlib.h pair_mat.h RNAstruct.h dist_vars.h mfe.h mfe_window.h fold.h part_func.h part_func_window.h pf_multifold.h stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h inverse.h subopt.h subopt_zuker.h cofold.h duplex.h alifold.h part_func_co.h ProfileAln.h LPfold.h Lfold.h part_func_up.h ribo.h findpath.h data_structures.h char_stream.h stream_output.h fold_compound.h MEA.h mm.h loop_energies.h exterior_loops.h hairpin_loops.h interior_loops.h multibranch_loops.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1282 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h constraints.h eval.h perturbation_fold.h centroid.h utils.h structure_utils.h string_utils.h aln_util.h model.h dp_matrices.h PS_dot.h plot_structure.h plot_aln.h plot_utils.h plot_layouts.h boltzmann_sampling.h equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h constraints_hard.h constraints_soft.h alphabet.h sequence.h grammar.h structured_domains.h unstructured_domains.h file_utils.h file_formats.h file_formats_msa.h energy_par.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1283 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 energy_const.h params.h read_epars.h convert_epars.h commands.h units.h combinatorics.h neighbor.h walk.h heat_capacity.h svm_utils.h ../libsvm-3.25/svm.h ../json/json.h naview.h zscore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA'1284 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints'1285 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 constraints/basic.h constraints/ligand.h constraints/SHAPE.h constraints/hard.h constraints/soft.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints'1286 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures'1287 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 datastructures/basic.h datastructures/lists.h datastructures/char_stream.h datastructures/stream_output.h datastructures/hash_tables.h datastructures/heap.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures'1288 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io'1289 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 io/utils.h io/file_formats.h io/file_formats_msa.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io'1290 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape'1291 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 landscape/paths.h landscape/findpath.h landscape/neighbor.h landscape/walk.h landscape/move.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape'1292 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops'1293 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 loops/all.h loops/external.h loops/hairpin.h loops/internal.h loops/multibranch.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops'1294 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params'1295 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 params/default.h params/constants.h params/basic.h params/io.h params/convert.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params'1296 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting'1297 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/alignments.h plotting/layouts.h plotting/probabilities.h plotting/structures.h plotting/utils.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting'1298 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler'1299 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/RNApuzzler/RNApuzzler.h plotting/RNApuzzler/RNAturtle.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler'1300 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search'1301 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 search/BoyerMoore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search'1302 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils'1303 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 utils/basic.h utils/strings.h utils/structures.h utils/alignments.h utils/higher_order_functions.h utils/cpu.h utils/units.h utils/svm.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils'1304make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1305make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1306make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA'1307Making install in bin1308make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/bin'1309make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin'1310 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1311 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold RNAparconv RNAPKplex RNAplex RNAsnoop RNApvmin RNAdos RNAmultifold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1312libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold1313libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAeval /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval1314libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAheat /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat1315libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApdist /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist1316libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdistance /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance1317libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAinverse /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse1318libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplot /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot1319libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsubopt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt1320libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold1321libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAcofold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold1322libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApaln /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln1323libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex1324libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold1325libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold1326libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAup /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup1327libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAaliduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex1328libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold1329libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA2Dfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold1330libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAparconv /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv1331libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAPKplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex1332libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex1333libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsnoop /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop1334libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApvmin /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin1335libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdos /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos1336libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAmultifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold1337make[3]: Nothing to be done for 'install-data-am'.1338make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin'1339make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin'1340Making install in Utils1341make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils'1342make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils'1343 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1344 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct popt ct2db '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1345libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct1346libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c popt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt1347libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ct2db /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db1348 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin'1349 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2mt.pl dpzoom.pl mountain.pl relplot.pl rotate_ss.pl cmount.pl coloraln.pl refold.pl switch.pl RNAdesign.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin'1350make install-data-hook1351make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils'1352 GEN install-data-hook1353make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils'1354make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils'1355make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils'1356Making install in Cluster1357make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster'1358make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster'1359 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1360 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists AnalyseSeqs '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1361libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists1362libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseSeqs /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs1363 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1364 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 AnalyseDists.1 AnalyseSeqs.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1365make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster'1366make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster'1367make[2]: Entering directory '/build/ViennaRNA-2.5.1/src'1368make[3]: Entering directory '/build/ViennaRNA-2.5.1/src'1369make[3]: Nothing to be done for 'install-exec-am'.1370make[3]: Nothing to be done for 'install-data-am'.1371make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src'1372make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src'1373make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src'1374Making install in man1375make[1]: Entering directory '/build/ViennaRNA-2.5.1/man'1376make[2]: Entering directory '/build/ViennaRNA-2.5.1/man'1377make[2]: Nothing to be done for 'install-exec-am'.1378 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info'1379 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib.info '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info'1380 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1381 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA2Dfold.1 RNAaliduplex.1 RNAalifold.1 RNAcofold.1 RNAduplex.1 RNAeval.1 RNAfold.1 RNAheat.1 RNAinverse.1 RNALalifold.1 RNALfold.1 RNAmultifold.1 RNApaln.1 RNAparconv.1 RNAplfold.1 RNAplot.1 RNApvmin.1 RNAsubopt.1 RNAup.1 RNAPKplex.1 RNAsnoop.1 RNAplex.1 RNAdistance.1 RNApdist.1 RNAdos.1 ct2db.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1382make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man'1383make[1]: Leaving directory '/build/ViennaRNA-2.5.1/man'1384Making install in misc1385make[1]: Entering directory '/build/ViennaRNA-2.5.1/misc'1386make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc'1387make[2]: Nothing to be done for 'install-exec-am'.1388 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA'1389 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dlandscape_mfe.gri 2Dlandscape_pf.gri rna_turner1999.par rna_turner2004.par rna_andronescu2007.par dna_mathews1999.par dna_mathews2004.par rna_langdon2018.par rna_misc_special_hairpins.par 2Dlandscape.R '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA'1390make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc'1391make[1]: Leaving directory '/build/ViennaRNA-2.5.1/misc'1392Making install in doc1393make[1]: Entering directory '/build/ViennaRNA-2.5.1/doc'1394Making install in CLA1395make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA'1396make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA'1397make[3]: Nothing to be done for 'install-exec-am'.1398for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \1399 test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \1400done1401test -f ./ViennaRNA-CLA-Individual.pdf || ln -s ./ViennaRNA-CLA-Individual.pdf ./ViennaRNA-CLA-Individual.pdf1402/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Individual.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA1403{ test ! -h ./ViennaRNA-CLA-Individual.pdf || rm -f ./ViennaRNA-CLA-Individual.pdf; }1404test -f ./ViennaRNA-CLA-Entity.pdf || ln -s ./ViennaRNA-CLA-Entity.pdf ./ViennaRNA-CLA-Entity.pdf1405/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Entity.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA1406{ test ! -h ./ViennaRNA-CLA-Entity.pdf || rm -f ./ViennaRNA-CLA-Entity.pdf; }1407make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA'1408make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA'1409make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc'1410make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc'1411make[3]: Nothing to be done for 'install-exec-am'.1412Making installdirs in CLA1413make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA'1414for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \1415 test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \1416done1417make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA'1418make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc'1419for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA"; do \1420 test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \1421done1422make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc'1423Making html in CLA1424make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA'1425make[4]: Nothing to be done for 'html'.1426make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA'1427make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc'1428make[4]: Nothing to be done for 'html-am'.1429make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc'1430test -d ./html || ln -s ./html ./html1431{ for i in ./html/*; do cp -r "$i" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html/"; done }1432{ for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/*; do test -f "$i" && chmod 644 "$i"; done }1433chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"1434{ for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search/*; do test -f "$i" && chmod 644 "$i"; done }1435chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search1436{ test ! -h ./html || rm -f ./html; }1437test -f ./RNAlib-2.5.1.pdf || ln -s ./RNAlib-2.5.1.pdf ./RNAlib-2.5.1.pdf1438/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA1439{ test ! -h ./RNAlib-2.5.1.pdf || rm -f ./RNAlib-2.5.1.pdf; }1440 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA'1441 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 viennarna.bib DoxygenLayout.xml '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA'1442make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc'1443make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc'1444make[1]: Leaving directory '/build/ViennaRNA-2.5.1/doc'1445Making install in RNA-Tutorial1446make[1]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'1447make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'1448make[2]: Nothing to be done for 'install-exec-am'.1449for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x"; do \1450 test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \1451done1452test -f ./RNA-tutorial-2.5.1.pdf || ln -s ./RNA-tutorial-2.5.1.pdf ./RNA-tutorial-2.5.1.pdf1453/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNA-tutorial-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA1454{ test ! -h ./RNA-tutorial-2.5.1.pdf || rm -f ./RNA-tutorial-2.5.1.pdf; }1455 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz'1456 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/alifoldz/miRNA.aln ./Data/alifoldz/unknown.aln '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz'1457 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial'1458 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/5S.seq ./Data/duplex.seq ./Data/FOO.seq ./Data/four.seq ./Data/RNaseP.seq ./Data/RybB.seq ./Data/t.seq ./Data/dot.emacs ./Data/RNaseP.aln ./Data/RNaseP.dnd '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial'1459 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs'1460 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/programs/alifoldz_adopted.tar.gz '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs'1461 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna'1462 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/qrna/coding.fa ./Data/qrna/tRNA.fa '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna'1463 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz'1464 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/IRE.aln ./Data/rnaz/snoRNA.aln ./Data/rnaz/tRNA.aln ./Data/rnaz/unknown.aln ./Data/rnaz/miRNA.maf ./Data/rnaz/tRNA.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz'1465 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes'1466 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/annotation.bed ./Data/rnaz/herpes/NC_004367 ./Data/rnaz/herpes/NC_006146 ./Data/rnaz/herpes/NC_007605 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes'1467 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x'1468 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/x/annotation.bed ./Data/rnaz/herpes/x/NC_006146.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_006146.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.sing.maf ./Data/rnaz/herpes/x/final.maf ./Data/rnaz/herpes/x/random.maf ./Data/rnaz/herpes/x/raw-tba.maf ./Data/rnaz/herpes/x/windows.maf ./Data/rnaz/herpes/x/windows_random.maf ./Data/rnaz/herpes/x/results.dat ./Data/rnaz/herpes/x/results_annotated.dat ./Data/rnaz/herpes/x/results_random.dat ./Data/rnaz/herpes/x/rnaz.out ./Data/rnaz/herpes/x/rnaz_random.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x'1469 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human'1470 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/annotation.bed '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human'1471 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x'1472 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/x/annotation.bed ./Data/rnaz/human/x/prediction.bed ./Data/rnaz/human/x/region.maf ./Data/rnaz/human/x/windows.maf ./Data/rnaz/human/x/results.dat ./Data/rnaz/human/x/results_annotated.dat ./Data/rnaz/human/x/rnaz.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x'1473make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'1474make[1]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial'1475Making install in interfaces1476make[1]: Entering directory '/build/ViennaRNA-2.5.1/interfaces'1477Making install in Perl1478make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1479make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1480make[3]: Nothing to be done for 'install-exec-am'.1481 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0'1482 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA'1483 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/Benchmark.pm RNA/Design.pm RNA/Files.pm RNA/Reliability.pm RNA/Utils.pm RNA/Params.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA'1484 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/.'1485 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA'1486 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA'1487libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so1488libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la1489libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA1490----------------------------------------------------------------------1491Libraries have been installed in:1492 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA14931494If you ever happen to want to link against installed libraries1495in a given directory, LIBDIR, you must either use libtool, and1496specify the full pathname of the library, or use the '-LLIBDIR'1497flag during linking and do at least one of the following:1498 - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable1499 during execution1500 - add LIBDIR to the 'LD_RUN_PATH' environment variable1501 during linking1502 - use the '-Wl,-rpath -Wl,LIBDIR' linker flag15031504See any operating system documentation about shared libraries for1505more information, such as the ld(1) and ld.so(8) manual pages.1506----------------------------------------------------------------------1507make install-data-hook1508make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1509rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la1510make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1511make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1512make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl'1513Making install in Python1514make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python'1515make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python'1516 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA'1517 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__init__.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA'1518 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA'1519 /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c _RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA'1520libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.cpython-310-aarch64-linux-gnu.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so1521libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la1522libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA1523----------------------------------------------------------------------1524Libraries have been installed in:1525 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA15261527If you ever happen to want to link against installed libraries1528in a given directory, LIBDIR, you must either use libtool, and1529specify the full pathname of the library, or use the '-LLIBDIR'1530flag during linking and do at least one of the following:1531 - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable1532 during execution1533 - add LIBDIR to the 'LD_RUN_PATH' environment variable1534 during linking1535 - use the '-Wl,-rpath -Wl,LIBDIR' linker flag15361537See any operating system documentation about shared libraries for1538more information, such as the ld(1) and ld.so(8) manual pages.1539----------------------------------------------------------------------1540 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__'1541 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__pycache__/__init__.cpython-310.pyc RNA/__pycache__/__init__.cpython-310.opt-1.pyc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__'1542make install-data-hook1543make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python'1544rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la1545make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python'1546make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python'1547make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python'1548make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces'1549make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces'1550make[3]: Nothing to be done for 'install-exec-am'.1551make[3]: Nothing to be done for 'install-data-am'.1552make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces'1553make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces'1554make[1]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces'1555Making install in src/Kinfold1556make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1557Making install in Example1558make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1559make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1560make[3]: Nothing to be done for 'install-exec-am'.1561make[3]: Nothing to be done for 'install-data-am'.1562make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1563make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example'1564make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1565make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold'1566 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1567 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c Kinfold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1568 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1569 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Kinfold.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1570make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1571make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1572make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold'1573Making install in src/RNAforester1574make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1575Making install in g2-0.721576make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72'1577test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib1578test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include1579/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 libg2.a //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib1580for IFILE in ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ; do \1581 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 $IFILE //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include; \1582done1583make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72'1584Making install in src1585make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1586make install-am1587make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1588make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1589 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1590 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAforester '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1591make[4]: Nothing to be done for 'install-data-am'.1592make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1593make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1594make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src'1595Making install in man1596make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1597make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1598make[3]: Nothing to be done for 'install-exec-am'.1599 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1600 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAforester.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1601make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1602make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man'1603make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1604make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester'1605make[3]: Nothing to be done for 'install-exec-am'.1606make[3]: Nothing to be done for 'install-data-am'.1607make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1608make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1609make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester'1610Making install in src/Kinwalker1611make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1612Making install in man1613make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1614make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1615make[3]: Nothing to be done for 'install-exec-am'.1616 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1617 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 kinwalker.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1618make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1619make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man'1620make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1621make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1622 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1623 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c kinwalker '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1624make[3]: Nothing to be done for 'install-data-am'.1625make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1626make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1627make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker'1628Making install in src/RNAlocmin1629make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1630make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1631 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1632 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAlocmin '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin'1633 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1634 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlocmin.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1'1635make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1636make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin'1637Making install in tests1638make[1]: Entering directory '/build/ViennaRNA-2.5.1/tests'1639make install-am1640make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests'1641make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests'1642make[3]: Nothing to be done for 'install-exec-am'.1643make[3]: Nothing to be done for 'install-data-am'.1644make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests'1645make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests'1646make[1]: Leaving directory '/build/ViennaRNA-2.5.1/tests'1647Making install in examples1648make[1]: Entering directory '/build/ViennaRNA-2.5.1/examples'1649make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples'1650make[2]: Nothing to be done for 'install-exec-am'.1651 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples'1652 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 callback_subopt.c example1.c example_old.c fold_compound_md.c fold_compound_mfe.c helloworld_mfe.c helloworld_mfe_comparative.c helloworld_probabilities.c soft_constraints_up.c '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples'1653 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data'1654 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 files/alignment_clustal.aln files/alignment_fasta.fa files/alignment_stockholm.stk files/alignment_maf.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data'1655 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5'1656 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Perl5/helloworld_mfe.pl Perl5/helloworld_mfe_comparative.pl Perl5/helloworld_nondefault.pl Perl5/maximum_matching.pl Perl5/oo_example1.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5'1657 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python'1658 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Python/boltzmann_sampling.py Python/helloworld_mfe_comparative.py Python/helloworld_mfe.py Python/helloworld_nondefault.py Python/maximum_matching.py Python/oo_example1.py Python/subopt.py Python/RNAfold_MEA.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python'1659make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples'1660make[1]: Leaving directory '/build/ViennaRNA-2.5.1/examples'1661Making install in packaging/macosx1662make[1]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx'1663make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx'1664make[2]: Nothing to be done for 'install-exec-am'.1665make[2]: Nothing to be done for 'install-data-am'.1666make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx'1667make[1]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx'1668make[1]: Entering directory '/build/ViennaRNA-2.5.1'1669make[2]: Entering directory '/build/ViennaRNA-2.5.1'1670make[2]: Nothing to be done for 'install-exec-am'.1671 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig'1672 /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlib2.pc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig'1673make[2]: Leaving directory '/build/ViennaRNA-2.5.1'1674make[1]: Leaving directory '/build/ViennaRNA-2.5.1'fixupPhase
1675post-installation fixup1676shrinking RPATHs of ELF executables and libraries in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.11677shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so1678shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so1679shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold1680shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold1681shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists1682shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold1683shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance1684shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat1685shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold1686shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt1687shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/kinwalker1688shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse1689shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval1690shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex1691shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex1692shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist1693shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup1694shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv1695shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAforester1696shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs1697shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold1698shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin1699shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold1700shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAlocmin1701shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct1702shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos1703shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/Kinfold1704shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex1705shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt1706shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold1707shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln1708shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop1709shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db1710shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold1711shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex1712shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot1713gzipping man pages under /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/1714strip is /nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin/strip1715stripping (with command strip and flags -S) in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin1716patching script interpreter paths in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.11717checking for references to /build/ in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1...