elastic-arm-0f89b4f7: building wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv Running phase: unpackPhase unpacking sources unpacking source archive /nix/store/mxbfkn8wrd1g1qpifs1s2c3knhrgrc9v-ViennaRNA-2.5.1.tar.gz source root is ViennaRNA-2.5.1 setting SOURCE_DATE_EPOCH to timestamp 1654156553 of file ViennaRNA-2.5.1/src/RNAforester/g2-0.72/src/g2_virtual_device.h Running phase: patchPhase patching sources Running phase: updateAutotoolsGnuConfigScriptsPhase updateAutotoolsGnuConfigScriptsPhase Updating Autotools / GNU config script to a newer upstream version: ./config/config.sub Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.sub Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.sub Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.sub Updating Autotools / GNU config script to a newer upstream version: ./config/config.guess Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.guess Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.guess Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.guess Running phase: configurePhase configuring fixing libtool script ./config/ltmain.sh ./configure configure flags: --disable-static --disable-dependency-tracking --prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 --with-cluster --with-kinwalker checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking whether make supports nested variables... yes checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether UID '1000' is supported by ustar format... yes checking whether GID '100' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking dependency style of gcc... none checking if malloc debugging is wanted... no checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for gcc... 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Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead .cpython-310-aarch64-linux-gnu.so checking for Python3 tag for cached compiled scripts... cpython-310 checking for Python3 extension of cached and optimized bytecode... cpython-310.opt-1.pyc checking for doxygen... no checking for dot... no checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/egrep checking for perl... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl checking for doc/RNAlib-2.5.1.pdf... yes checking for doc/html/index.html... yes checking for htlatex... no configure: WARNING: Could not find pdflatex! configure: WARNING: deactivating automatic (re)generation of tutorial! checking for RNA-Tutorial/RNA-tutorial-2.5.1.pdf... yes configure: WARNING: Could not find pdflatex! configure: WARNING: deactivating automatic (re)generation of CLA! checking for 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checking for ./src/Cluster/Makefile.am... yes checking for ./src/Kinwalker/Makefile.am... yes checking for ./src/RNAlocmin/Makefile.am... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating packaging/macosx/Makefile config.status: creating packaging/macosx/Distribution.xml config.status: creating packaging/macosx/resources/welcome.txt config.status: creating src/ViennaRNA/plotting/naview/Makefile config.status: creating interfaces/Perl/Makefile config.status: creating interfaces/Perl/version.i config.status: creating interfaces/Python/Makefile config.status: creating interfaces/Python/version.i config.status: creating tests/Makefile config.status: creating tests/RNApath.py config.status: creating tests/RNAHelpers.pm config.status: creating tests/test-env.sh config.status: creating src/ViennaRNA/static/templates_postscript.h config.status: creating src/ViennaRNA/static/templates_svg.h config.status: creating src/ViennaRNA/static/energy_parameter_sets.h config.status: creating src/Cluster/Makefile config.status: creating src/ViennaRNA/vrna_config.h config.status: creating misc/Makefile config.status: creating interfaces/Makefile config.status: creating Makefile config.status: creating RNAlib2.pc config.status: creating src/Utils/Makefile config.status: creating src/bin/Makefile config.status: creating src/Makefile config.status: creating src/ViennaRNA/Makefile config.status: creating src/ViennaRNA/static/Makefile config.status: creating man/Makefile config.status: creating doc/Makefile config.status: creating doc/CLA/Makefile config.status: creating RNA-Tutorial/Makefile config.status: creating man/cmdlopt.sh config.status: creating examples/Makefile config.status: creating packaging/viennarna.spec config.status: creating packaging/PKGBUILD config.status: creating packaging/win_installer_archlinux_i686.nsi config.status: creating packaging/win_installer_archlinux_x86_64.nsi config.status: creating packaging/win_installer_fedora_i686.nsi config.status: creating packaging/win_installer_fedora_x86_64.nsi config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in src/Kinfold (/build/ViennaRNA-2.5.1/src/Kinfold) configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. checking whether make supports nested variables... yes checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking if malloc debugging is wanted... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for strdup... yes checking for memset... yes checking for strchr... yes checking for pkg-config... no checking for VRNA... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes ./configure: line 4958: #include: command not found checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for exp in -lm... yes checking for an ANSI C-conforming const... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Example/Makefile config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands === configuring in src/RNAforester (/build/ViennaRNA-2.5.1/src/RNAforester) configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. checking whether make supports nested variables... yes checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking for g++ option to support OpenMP... -fopenmp checking for pkg-config... no checking for VRNA... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes ./configure: line 5995: #include: command not found checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E checking for g2.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands === configuring in g2-0.72 (/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72) configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking for find... find checking for makedepend... : checking for dlopen in -ldl... yes checking for X... no checking for main in -lm... yes checking for main in -lX11... no checking for main in -lXext... no checking for main in -lgd... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes ./configure: line 5714: #include: command not found checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E checking for limits.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating demo/Makefile config.status: creating g2_perl/Makefile.PL config.status: creating g2_python/Makefile Supported devices: PostScript FIG Unsupported devices: X11 Xdbe Win32 GD GD (GIF) Run 'make depend' to create dependencies. === configuring in src/Kinwalker (/build/ViennaRNA-2.5.1/src/Kinwalker) configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. checking whether make supports nested variables... yes checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for inline... inline checking for pkg-config... no checking for VRNA... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands === configuring in src/RNAlocmin (/build/ViennaRNA-2.5.1/src/RNAlocmin) configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking whether make supports nested variables... yes checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking how to run the C preprocessor... gcc -E checking whether g++ supports C++11 features by default... yes checking for strchr... yes checking for strdup... yes checking for strtol... yes checking for limits.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for working strtod... yes checking for size_t... yes checking for pkg-config... no checking for VRNA... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: ====================================== ViennaRNA Package 2.5.1 ====================================== Successfully configured with the following options: Sub Packages ------------ * Kinfold : yes * RNAforester : yes * Analyse{Dists,Seqs} : yes * RNAlocmin : yes * Kinwalker : yes Extra Libraries --------------- * Support Vector Machine : yes * GNU Scientific Library : yes * GNU MPFR : yes * JSON : yes Features -------- * Use hash for NR Sampling : no * C11 features : yes * TTY colors : yes * Float Precision(PF} : no * Deprecation Warnings : no Optimizations ------------- * Auto Vectorization : yes * Explicit SIMD Extension : yes * Link Time Optimization : yes * POSIX Threads : yes * OpenMP : yes Scripting Language Interfaces ----------------------------- * Perl 5 : yes * Python 3.x : yes * Python 2.x : no Documentation ------------- * Reference Manual (PDF) : yes * Reference Manual (HTML) : yes * Tutorial (PDF) : yes * Tutorial (HTML) : no * CLA (PDF) : yes Unit Tests ---------- * Executable Programs : yes * C-Library : no * Perl 5 Interface : yes * Python 3.x Interface : yes * Python 2.x Interface : no MacOS X ------- * Universal Binary : no * Installer : no * SDK : no Install Directories ------------------- * Executables : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin * Libraries : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib * Header files : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include * Extra Data : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share * Man pages : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man * Documentation : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA (HTML) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html (PDF) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA * Perl5 Interface : (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0 * Python 3.x Interface : (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages * Python 2.x Interface : Not to be installed python2 executable missing (binaries) : (scripts) : You can run 'make', 'make check', and 'make install' now! Running phase: buildPhase building build flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash make all-recursive make[1]: Entering directory '/build/ViennaRNA-2.5.1' Making all in src make[2]: Entering directory '/build/ViennaRNA-2.5.1/src' Making all in ViennaRNA make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' Making all in static make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make all-am make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' Making all in plotting/naview make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' CC naview.lo CCLD libRNA_naview.la make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' CC fold_compound.lo CC dist_vars.lo CC part_func.lo CC part_func_wrappers.lo CC pf_fold.lo CC pf_multifold.lo CC treedist.lo CC inverse.lo CC ProfileDist.lo CC RNAstruct.lo CC mfe.lo CC mfe_window.lo CC mfe_wrappers.lo CC mfe_window_wrappers.lo CC fold.lo CC stringdist.lo CC subopt.lo CC subopt_zuker.lo CC Lfold.lo CC cofold.lo CC part_func_co.lo CC ProfileAln.lo CC duplex.lo CC alifold.lo CC alipfold.lo CC LPfold.lo CC part_func_up.lo CC ribo.lo CC MEA.lo CC mm.lo CC 2Dfold.lo CC 2Dpfold.lo CC plex_functions.lo CC ali_plex.lo CC c_plex.lo CC plex.lo CC snofold.lo CC snoop.lo CC gquad.lo CC perturbation_fold.lo CC centroid.lo CC model.lo CC dp_matrices.lo CC boltzmann_sampling.lo CC bs_wrappers.lo CC equilibrium_probs.lo CXX ../libsvm-3.25/svm.lo CC ../json/json.lo CC alphabet.lo CC sequence.lo CC unstructured_domains.lo CC grammar.lo CC heat_capacity.lo CC zscore.lo CC libRNA_concentrations_la-concentrations.lo CXX ../dlib-19.23/dlib/all/libRNA_concentrations_la-source.lo CXX libRNA_concentrations_la-wrap_dlib.lo CXXLD libRNA_concentrations.la CC constraints/constraints.lo CC constraints/SHAPE.lo CC constraints/hard.lo CC constraints/soft.lo CC constraints/ligand.lo CCLD libRNA_constraints.la CC datastructures/basic_datastructures.lo CC datastructures/lists.lo CC datastructures/char_stream.lo CC datastructures/stream_output.lo CC datastructures/hash_tables.lo CC datastructures/heap.lo CCLD libRNA_datastructures.la CC utils/utils.lo CC utils/string_utils.lo CC utils/structure_utils.lo CC utils/structure_tree.lo CC utils/msa_utils.lo CC utils/higher_order_functions.lo CC utils/cpu.lo CC utils/units.lo CC io/io_utils.lo CC io/file_formats.lo CC io/file_formats_msa.lo CC search/BoyerMoore.lo CC commands.lo CC combinatorics.lo CC utils/svm_utils.lo CCLD libRNA_utils.la CC plotting/alignments.lo CC plotting/layouts.lo CC plotting/probabilities.lo CC plotting/structures.lo CC plotting/plot_utils.lo CC plotting/RNApuzzler/RNApuzzler.lo CC plotting/RNApuzzler/RNAturtle.lo CCLD libRNA_plotting.la CC params/io.lo CC params/default.lo CC params/params.lo CC params/convert.lo CCLD libRNA_params.la CC eval.lo CC eval_covariance.lo CC eval_wrappers.lo CCLD libRNA_eval.la CC loops/external.lo CC loops/external_bt.lo CC loops/external_pf.lo CC loops/hairpin.lo CC loops/hairpin_bt.lo CC loops/hairpin_pf.lo CC loops/internal.lo CC loops/internal_bt.lo CC loops/internal_pf.lo CC loops/multibranch.lo CC loops/multibranch_bt.lo CC loops/multibranch_pf.lo CCLD libRNA_loops.la CC move_set.lo CC landscape/move.lo CC landscape/findpath.lo CC landscape/neighbor.lo CC landscape/walk.lo CCLD libRNA_landscape.la CXXLD libRNA_conv.la CXXLD libRNA.la CC special_const.lo CC ugly_bt.lo CCLD libRNA_special_const.la GEN libRNA.a make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' Making all in bin make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' CC RNAfold_cmdl.o CC RNAfold.o CC input_id_helpers.lo CC parallel_helpers.lo CC ../cthreadpool/thpool.lo CCLD libhelpers.la CCLD RNAfold CC RNAeval_cmdl.o CC RNAeval.o CCLD RNAeval CC RNAheat_cmdl.o CC RNAheat.o CCLD RNAheat CC RNApdist_cmdl.o CC RNApdist.o CCLD RNApdist CC RNAdistance_cmdl.o CC RNAdistance.o CCLD RNAdistance CC RNAinverse_cmdl.o CC RNAinverse.o CCLD RNAinverse CC RNAplot_cmdl.o CC RNAplot.o CCLD RNAplot CC RNAsubopt_cmdl.o CC RNAsubopt.o CCLD RNAsubopt CC RNALfold_cmdl.o CC RNALfold.o CCLD RNALfold CC RNAcofold_cmdl.o CC RNAcofold.o CCLD RNAcofold CC RNApaln_cmdl.o CC RNApaln.o CCLD RNApaln CC RNAduplex_cmdl.o CC RNAduplex.o CCLD RNAduplex CC RNAalifold_cmdl.o CC RNAalifold.o CCLD RNAalifold CC RNAplfold_cmdl.o CC RNAplfold.o CCLD RNAplfold CC RNAup_cmdl.o CC RNAup.o CCLD RNAup CC RNAaliduplex_cmdl.o CC RNAaliduplex.o CCLD RNAaliduplex CC RNALalifold_cmdl.o CC RNALalifold.o CCLD RNALalifold CC RNA2Dfold_cmdl.o CC RNA2Dfold.o CCLD RNA2Dfold CC RNAparconv_cmdl.o CC RNAparconv.o CCLD RNAparconv CC RNAPKplex_cmdl.o CC RNAPKplex.o CCLD RNAPKplex CC RNAplex_cmdl.o CC RNAplex.o CCLD RNAplex CC RNAsnoop_cmdl.o CC RNAsnoop.o CCLD RNAsnoop CC RNApvmin_cmdl.o CC RNApvmin.o CCLD RNApvmin CC RNAdos_cmdl.o CC RNAdos.o CCLD RNAdos CC RNAmultifold_cmdl.o CC RNAmultifold.o CCLD RNAmultifold make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' Making all in Utils make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' CC b2ct.o CCLD b2ct CC popt.o CCLD popt CC ct2db_cmdl.o CC ct2db.o CCLD ct2db make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' Making all in Cluster make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' CC split.o CC distance_matrix.o CC cluster.o CC treeplot.o CC AD_main.o CCLD AnalyseDists CC statgeom.o CC AS_main.o CC PS3D.o CCLD AnalyseSeqs make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src' Making all in man make[2]: Entering directory '/build/ViennaRNA-2.5.1/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man' Making all in misc make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc' Making all in doc make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc' Making all in CLA make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc' Making all in RNA-Tutorial make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' Making all in interfaces make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' Making all in Perl make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' CXX RNA_la-RNA_wrap.lo CXXLD RNA.la GEN auto/RNA/RNA.so make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' Making all in Python make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' CXX _RNA_la-RNA_wrap.lo CXXLD _RNA.la GEN RNA/__init__.py GEN RNA/_RNA.cpython-310-aarch64-linux-gnu.so GEN RNA/__pycache__/__init__.cpython-310.pyc GEN RNA/__pycache__/__init__.cpython-310.opt-1.pyc make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' Making all in src/Kinfold make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' make all-recursive make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' Making all in Example make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' CC baum.o CC cache.o CC globals.o globals.c: In function 'process_options_gg': globals.c:358:41: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=] 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", | ~^ | | | float * | %lg 359 | &GAV.phi_bounds[0], | ~~~~~~~~~~~~~~~~~~ | | | double * globals.c:358:44: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=] 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", | ~^ | | | float * | %lg 359 | &GAV.phi_bounds[0], 360 | &GAV.phi_bounds[1], | ~~~~~~~~~~~~~~~~~~ | | | double * globals.c:358:47: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=] 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", | ~^ | | | float * | %lg ...... 361 | &GAV.phi_bounds[2]) == 0) | ~~~~~~~~~~~~~~~~~~ | | | double * globals.c: In function 'process_options': globals.c:448:25: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=] 448 | if (sscanf(optarg, "%g=%g=%g", | ~^ | | | float * | %lg 449 | &GAV.phi_bounds[0], | ~~~~~~~~~~~~~~~~~~ | | | double * globals.c:448:28: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=] 448 | if (sscanf(optarg, "%g=%g=%g", | ~^ | | | float * | %lg 449 | &GAV.phi_bounds[0], 450 | &GAV.phi_bounds[1], | ~~~~~~~~~~~~~~~~~~ | | | double * globals.c:448:31: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=] 448 | if (sscanf(optarg, "%g=%g=%g", | ~^ | | | float * | %lg ...... 451 | &GAV.phi_bounds[2]) == 0) | ~~~~~~~~~~~~~~~~~~ | | | double * CC main.o CC nachbar.o nachbar.c: In function 'sel_nb': nachbar.c:318:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 318 | sprintf(format, "%%-%ds %%6.2f %%10.3f", strlen(GAV.farbe_full)+1); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld CC cmdline.o CCLD Kinfold make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' Making all in src/RNAforester make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' make all-recursive make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' Making all in g2-0.72 make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_device.c -o src/g2_device.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_control.c -o src/g2_ui_control.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_util.c -o src/g2_util.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_fif.c -o src/g2_fif.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_virtual_device.c -o src/g2_virtual_device.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_physical_device.c -o src/g2_physical_device.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_graphic_pd.c -o src/g2_graphic_pd.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_control_pd.c -o src/g2_control_pd.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_graphic.c -o src/g2_ui_graphic.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_virtual_device.c -o src/g2_ui_virtual_device.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_device.c -o src/g2_ui_device.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_splines.c -o src/g2_splines.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/PS/g2_PS.c -o src/PS/g2_PS.o gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/FIG/g2_FIG.c -o src/FIG/g2_FIG.o src/FIG/g2_FIG.c: In function 'g2_FIG_draw_string': src/FIG/g2_FIG.c:477:47: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 477 | fprintf(fig->fp,"4 0 %d 1 -1 0 %d 0 5 %d %d %d %d ", | ~^ | | | int | %ld 478 | fig->pen_color, fig->font_size, fig->font_size, fig->font_size*strlen(text), x, y); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} gcc-ar cr libg2.a ./src/g2_device.o ./src/g2_ui_control.o ./src/g2_util.o ./src/g2_fif.o ./src/g2_virtual_device.o ./src/g2_physical_device.o ./src/g2_graphic_pd.o ./src/g2_control_pd.o ./src/g2_ui_graphic.o ./src/g2_ui_virtual_device.o ./src/g2_ui_device.o ./src/g2_splines.o ./src/PS/g2_PS.o ./src/FIG/g2_FIG.o test ! -n "gcc-ranlib" || gcc-ranlib libg2.a test -d ./include || mkdir ./include cp ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ./include/ make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' Making all in src make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make all-am make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' CXX anchors/bplex.o CXX anchors/shape.o CXX anchors/anchors.o CXX aligner.o CXX main.o CXX forestbase.o CXX parser.o CXX progressive_align.o CXX rna_profile_alignment.o CXX rna_alignment.o CXX rna_algebra.o CXX rna_alphabet.o CXX rnaforest.o CXX rnafuncs.o CXX frontend/Arguments.o CXX frontend/rnaforester_options.o CXX TED/rnaforestsz.o CC wmatch/glib.o CC wmatch/wmatch.o CXXLD RNAforester make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' Making all in man make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' Making all in src/Kinwalker make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make all-recursive make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' Making all in man make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' CXX main.o CXX Energy.o CXX MorganHiggs.o CXX Node.o CC options.o CXX Util.o CXXLD kinwalker make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' Making all in src/RNAlocmin make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' make all-am make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' CC RNAlocmin_cmdline.o CXX barrier_tree.o CXX findpath_pk.o CXX flood.o CXX globals.o CXX hash_util.o CXX main.o CC move_set_inside.o CXX move_set_pk.o CXX neighbourhood.o CXX pknots.o CXX RNAlocmin.o CXX treeplot.o CXXLD RNAlocmin make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' Making all in tests make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests' make all-am make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests' Making all in examples make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples' Making all in packaging/macosx make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[2]: Entering directory '/build/ViennaRNA-2.5.1' make[2]: Leaving directory '/build/ViennaRNA-2.5.1' make[1]: Leaving directory '/build/ViennaRNA-2.5.1' buildPhase completed in 27 minutes 34 seconds Running phase: installPhase installing install flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash install Making install in src make[1]: Entering directory '/build/ViennaRNA-2.5.1/src' Making install in ViennaRNA make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' Making install in static make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make install-am make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' Making install in plotting/naview make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' make[4]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 naview.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c libRNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.la libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.a /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a libtool: install: chmod 644 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a libtool: install: gcc-ranlib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ---------------------------------------------------------------------- Libraries have been installed in: /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 vrna_config.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 concentrations.h wrap_dlib.h pair_mat.h RNAstruct.h dist_vars.h mfe.h mfe_window.h fold.h part_func.h part_func_window.h pf_multifold.h stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h inverse.h subopt.h subopt_zuker.h cofold.h duplex.h alifold.h part_func_co.h ProfileAln.h LPfold.h Lfold.h part_func_up.h ribo.h findpath.h data_structures.h char_stream.h stream_output.h fold_compound.h MEA.h mm.h loop_energies.h exterior_loops.h hairpin_loops.h interior_loops.h multibranch_loops.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h constraints.h eval.h perturbation_fold.h centroid.h utils.h structure_utils.h string_utils.h aln_util.h model.h dp_matrices.h PS_dot.h plot_structure.h plot_aln.h plot_utils.h plot_layouts.h boltzmann_sampling.h equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h constraints_hard.h constraints_soft.h alphabet.h sequence.h grammar.h structured_domains.h unstructured_domains.h file_utils.h file_formats.h file_formats_msa.h energy_par.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 energy_const.h params.h read_epars.h convert_epars.h commands.h units.h combinatorics.h neighbor.h walk.h heat_capacity.h svm_utils.h ../libsvm-3.25/svm.h ../json/json.h naview.h zscore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 constraints/basic.h constraints/ligand.h constraints/SHAPE.h constraints/hard.h constraints/soft.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 datastructures/basic.h datastructures/lists.h datastructures/char_stream.h datastructures/stream_output.h datastructures/hash_tables.h datastructures/heap.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 io/utils.h io/file_formats.h io/file_formats_msa.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 landscape/paths.h landscape/findpath.h landscape/neighbor.h landscape/walk.h landscape/move.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 loops/all.h loops/external.h loops/hairpin.h loops/internal.h loops/multibranch.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 params/default.h params/constants.h params/basic.h params/io.h params/convert.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/alignments.h plotting/layouts.h plotting/probabilities.h plotting/structures.h plotting/utils.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/RNApuzzler/RNApuzzler.h plotting/RNApuzzler/RNAturtle.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 search/BoyerMoore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 utils/basic.h utils/strings.h utils/structures.h utils/alignments.h utils/higher_order_functions.h utils/cpu.h utils/units.h utils/svm.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils' make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' Making install in bin make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold RNAparconv RNAPKplex RNAplex RNAsnoop RNApvmin RNAdos RNAmultifold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAeval /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAheat /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApdist /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdistance /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAinverse /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplot /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsubopt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAcofold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApaln /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAup /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAaliduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA2Dfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAparconv /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAPKplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsnoop /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApvmin /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdos /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAmultifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' Making install in Utils make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct popt ct2db '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c popt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ct2db /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2mt.pl dpzoom.pl mountain.pl relplot.pl rotate_ss.pl cmount.pl coloraln.pl refold.pl switch.pl RNAdesign.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin' make install-data-hook make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' GEN install-data-hook make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' Making install in Cluster make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists AnalyseSeqs '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseSeqs /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 AnalyseDists.1 AnalyseSeqs.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' make[2]: Entering directory '/build/ViennaRNA-2.5.1/src' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src' Making install in man make[1]: Entering directory '/build/ViennaRNA-2.5.1/man' make[2]: Entering directory '/build/ViennaRNA-2.5.1/man' make[2]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib.info '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA2Dfold.1 RNAaliduplex.1 RNAalifold.1 RNAcofold.1 RNAduplex.1 RNAeval.1 RNAfold.1 RNAheat.1 RNAinverse.1 RNALalifold.1 RNALfold.1 RNAmultifold.1 RNApaln.1 RNAparconv.1 RNAplfold.1 RNAplot.1 RNApvmin.1 RNAsubopt.1 RNAup.1 RNAPKplex.1 RNAsnoop.1 RNAplex.1 RNAdistance.1 RNApdist.1 RNAdos.1 ct2db.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/man' Making install in misc make[1]: Entering directory '/build/ViennaRNA-2.5.1/misc' make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc' make[2]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dlandscape_mfe.gri 2Dlandscape_pf.gri rna_turner1999.par rna_turner2004.par rna_andronescu2007.par dna_mathews1999.par dna_mathews2004.par rna_langdon2018.par rna_misc_special_hairpins.par 2Dlandscape.R '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/misc' Making install in doc make[1]: Entering directory '/build/ViennaRNA-2.5.1/doc' Making install in CLA make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' make[3]: Nothing to be done for 'install-exec-am'. for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \ test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ done test -f ./ViennaRNA-CLA-Individual.pdf || ln -s ./ViennaRNA-CLA-Individual.pdf ./ViennaRNA-CLA-Individual.pdf /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Individual.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA { test ! -h ./ViennaRNA-CLA-Individual.pdf || rm -f ./ViennaRNA-CLA-Individual.pdf; } test -f ./ViennaRNA-CLA-Entity.pdf || ln -s ./ViennaRNA-CLA-Entity.pdf ./ViennaRNA-CLA-Entity.pdf /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Entity.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA { test ! -h ./ViennaRNA-CLA-Entity.pdf || rm -f ./ViennaRNA-CLA-Entity.pdf; } make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc' make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc' make[3]: Nothing to be done for 'install-exec-am'. Making installdirs in CLA make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \ test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ done make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc' for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA"; do \ test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ done make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc' Making html in CLA make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' make[4]: Nothing to be done for 'html'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc' make[4]: Nothing to be done for 'html-am'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc' test -d ./html || ln -s ./html ./html { for i in ./html/*; do cp -r "$i" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html/"; done } { for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/*; do test -f "$i" && chmod 644 "$i"; done } chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" { for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search/*; do test -f "$i" && chmod 644 "$i"; done } chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search { test ! -h ./html || rm -f ./html; } test -f ./RNAlib-2.5.1.pdf || ln -s ./RNAlib-2.5.1.pdf ./RNAlib-2.5.1.pdf /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA { test ! -h ./RNAlib-2.5.1.pdf || rm -f ./RNAlib-2.5.1.pdf; } /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 viennarna.bib DoxygenLayout.xml '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/doc' Making install in RNA-Tutorial make[1]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' make[2]: Nothing to be done for 'install-exec-am'. for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x"; do \ test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ done test -f ./RNA-tutorial-2.5.1.pdf || ln -s ./RNA-tutorial-2.5.1.pdf ./RNA-tutorial-2.5.1.pdf /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNA-tutorial-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA { test ! -h ./RNA-tutorial-2.5.1.pdf || rm -f ./RNA-tutorial-2.5.1.pdf; } /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/alifoldz/miRNA.aln ./Data/alifoldz/unknown.aln '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/5S.seq ./Data/duplex.seq ./Data/FOO.seq ./Data/four.seq ./Data/RNaseP.seq ./Data/RybB.seq ./Data/t.seq ./Data/dot.emacs ./Data/RNaseP.aln ./Data/RNaseP.dnd '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/programs/alifoldz_adopted.tar.gz '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/qrna/coding.fa ./Data/qrna/tRNA.fa '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/IRE.aln ./Data/rnaz/snoRNA.aln ./Data/rnaz/tRNA.aln ./Data/rnaz/unknown.aln ./Data/rnaz/miRNA.maf ./Data/rnaz/tRNA.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/annotation.bed ./Data/rnaz/herpes/NC_004367 ./Data/rnaz/herpes/NC_006146 ./Data/rnaz/herpes/NC_007605 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/x/annotation.bed ./Data/rnaz/herpes/x/NC_006146.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_006146.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.sing.maf ./Data/rnaz/herpes/x/final.maf ./Data/rnaz/herpes/x/random.maf ./Data/rnaz/herpes/x/raw-tba.maf ./Data/rnaz/herpes/x/windows.maf ./Data/rnaz/herpes/x/windows_random.maf ./Data/rnaz/herpes/x/results.dat ./Data/rnaz/herpes/x/results_annotated.dat ./Data/rnaz/herpes/x/results_random.dat ./Data/rnaz/herpes/x/rnaz.out ./Data/rnaz/herpes/x/rnaz_random.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/annotation.bed '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/x/annotation.bed ./Data/rnaz/human/x/prediction.bed ./Data/rnaz/human/x/region.maf ./Data/rnaz/human/x/windows.maf ./Data/rnaz/human/x/results.dat ./Data/rnaz/human/x/results_annotated.dat ./Data/rnaz/human/x/rnaz.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' Making install in interfaces make[1]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' Making install in Perl make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' make[3]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/Benchmark.pm RNA/Design.pm RNA/Files.pm RNA/Reliability.pm RNA/Utils.pm RNA/Params.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/.' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA ---------------------------------------------------------------------- Libraries have been installed in: /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make install-data-hook make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' Making install in Python make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__init__.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c _RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.cpython-310-aarch64-linux-gnu.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA ---------------------------------------------------------------------- Libraries have been installed in: /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__pycache__/__init__.cpython-310.pyc RNA/__pycache__/__init__.cpython-310.opt-1.pyc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__' make install-data-hook make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' Making install in src/Kinfold make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' Making install in Example make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c Kinfold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Kinfold.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' Making install in src/RNAforester make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' Making install in g2-0.72 make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 libg2.a //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib for IFILE in ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ; do \ /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 $IFILE //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include; \ done make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' Making install in src make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make install-am make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAforester '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' Making install in man make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[3]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAforester.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' Making install in src/Kinwalker make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' Making install in man make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[3]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 kinwalker.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c kinwalker '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' Making install in src/RNAlocmin make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAlocmin '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlocmin.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' Making install in tests make[1]: Entering directory '/build/ViennaRNA-2.5.1/tests' make install-am make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests' make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/tests' Making install in examples make[1]: Entering directory '/build/ViennaRNA-2.5.1/examples' make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples' make[2]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 callback_subopt.c example1.c example_old.c fold_compound_md.c fold_compound_mfe.c helloworld_mfe.c helloworld_mfe_comparative.c helloworld_probabilities.c soft_constraints_up.c '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 files/alignment_clustal.aln files/alignment_fasta.fa files/alignment_stockholm.stk files/alignment_maf.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Perl5/helloworld_mfe.pl Perl5/helloworld_mfe_comparative.pl Perl5/helloworld_nondefault.pl Perl5/maximum_matching.pl Perl5/oo_example1.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Python/boltzmann_sampling.py Python/helloworld_mfe_comparative.py Python/helloworld_mfe.py Python/helloworld_nondefault.py Python/maximum_matching.py Python/oo_example1.py Python/subopt.py Python/RNAfold_MEA.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python' make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/examples' Making install in packaging/macosx make[1]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[1]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' make[1]: Entering directory '/build/ViennaRNA-2.5.1' make[2]: Entering directory '/build/ViennaRNA-2.5.1' make[2]: Nothing to be done for 'install-exec-am'. /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig' /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlib2.pc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig' make[2]: Leaving directory '/build/ViennaRNA-2.5.1' make[1]: Leaving directory '/build/ViennaRNA-2.5.1' Running phase: fixupPhase post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/kinwalker shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAforester shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAlocmin shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/Kinfold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot gzipping man pages under /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/ strip is /nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin/strip stripping (with command strip and flags -S) in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin patching script interpreter paths in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 checking for references to /build/ in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1...