setup
checks.x86_64-linux.kent
· build #5
· raw
1this derivation will be built:2 /nix/store/vw2230fmhhflawhhklqgqqqz1cbk1657-kent-404.drv3these 2 paths will be fetched (38.2 KiB download, 300.7 KiB unpacked):4 /nix/store/5bikvrqmspllz4spidbwlv8giwq81q1h-mariadb-connector-c-3.2.5-dev5 /nix/store/h2hlr9f4b8dx1vhf9zdikxsns0bhr911-util-linux-minimal-2.38.1-dev6error: Cannot build '/nix/store/vw2230fmhhflawhhklqgqqqz1cbk1657-kent-404.drv'.7 Reason: builder failed with exit code 2.8 Output paths:9 /nix/store/5jh4ky0d835iciq2kggn6swc60q6h915-kent-40410 Last 25 log lines:11 > cd optimalLeaf && make12 > make[1]: Entering directory '/build/source/src/optimalLeaf'13 > g++ -c -g Tree.cc14 > g++ -c -g Leaf.cc15 > g++ -c -g readFile.cc16 > g++ -c -g SimMat.cc17 > g++ -c -g bestArr.cc18 > mkdir x86_6419 > ar rcus ../lib/x86_64/optimalLeaf.a Tree.o Leaf.o readFile.o SimMat.o bestArr.o20 > ar: `u' modifier ignored since `D' is the default (see `U')21 > make[1]: Leaving directory '/build/source/src/optimalLeaf'22 > ar rcus ../lib/x86_64/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o23 > ar: `u' modifier ignored since `D' is the default (see `U')24 > cd addCols && echo addCols && make25 > addCols26 > make[1]: Entering directory '/build/source/src/utils/addCols'27 > gcc -O -g -fPIC -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_HIC -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../../htslib -I/include -I/nix/store/ysl9apqk6qzwhnyqpd9xy4q2qd4aai5b-libpng-apng-1.6.37-dev/include/libpng16 -o addCols.o -c addCols.c28 > gcc -O -g -o /build/bin/x86_64/addCols addCols.o ../../lib/x86_64/jkweb.a -L/nix/store/slc88n7aip32jc9hgjif6whv2picbldl-mariadb-connector-c-3.2.5/lib/mariadb/ -lmariadb -lstdc++ -lrt -lstdc++ -lrt -lpthread -lssl -lcrypto ../../htslib/libhts.a -L/nix/store/8gmgb7m65nafhhqksc71bsfykggsx2ps-libpng-apng-1.6.37/lib -lpng16 -lm -lz29 > /nix/store/frh9l9nrdysasdi2gs7i241s241ngjw2-binutils-2.39/bin/ld: ../../lib/x86_64/jkweb.a(htmlPage.o):/build/source/src/lib/../inc/htmshell.h:163: multiple definition of `htmlRecover'; ../../lib/x86_64/jkweb.a(cheapcgi.o):/build/source/src/lib/../inc/htmshell.h:163: first defined here30 > /nix/store/frh9l9nrdysasdi2gs7i241s241ngjw2-binutils-2.39/bin/ld: ../../lib/x86_64/jkweb.a(htmshell.o):/build/source/src/lib/../inc/htmshell.h:163: multiple definition of `htmlRecover'; ../../lib/x86_64/jkweb.a(cheapcgi.o):/build/source/src/lib/../inc/htmshell.h:163: first defined here31 > /nix/store/frh9l9nrdysasdi2gs7i241s241ngjw2-binutils-2.39/bin/ld: ../../lib/x86_64/jkweb.a(portimpl.o):/build/source/src/lib/../inc/htmshell.h:163: multiple definition of `htmlRecover'; ../../lib/x86_64/jkweb.a(cheapcgi.o):/build/source/src/lib/../inc/htmshell.h:163: first defined here32 > collect2: error: ld returned 1 exit status33 > make[1]: *** [../../inc/userApp.mk:31: /build/bin/x86_64/addCols] Error 134 > make[1]: Leaving directory '/build/source/src/utils/addCols'35 > make: *** [makefile:214: addCols.all] Error 236 For full logs, run:37 nix log /nix/store/vw2230fmhhflawhhklqgqqqz1cbk1657-kent-404.drv