these 2 derivations will be built: /nix/store/lpk74i5k8cxxcdjgshcsh5zk2v8582j8-ViennaRNA-2.5.1.tar.gz.drv /nix/store/wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv these 5 paths will be fetched (1.7 MiB download, 8.4 MiB unpacked): /nix/store/xcmcci198h1pbsv07932k5mywjhcvbzy-gmp-with-cxx-6.2.1 /nix/store/v8h8pj5pq5cd63m2y1c2c30vjfcfw1yx-gmp-with-cxx-6.2.1-dev /nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1 /nix/store/ljm363ac6ha4disw2j9c92q0h5xw0r01-mpfr-4.1.1 /nix/store/60d95vwjb5q4ls25s8k48jlkx3vz0prj-mpfr-4.1.1-dev building '/nix/store/f0pz21k8i87w9dikxmpmqqy1svc8pqkk-ViennaRNA-2.5.1.tar.gz.drv' on 'grpc://farm.numtide.com:50051?client-cert=/run/secrets/vars/per-machine/bld1/nix-farm-ci/crt&client-key=/run/secrets/vars/per-machine/bld1/nix-farm-ci/key&connect-timeout=21&system=aarch64-linux' building '/nix/store/f0pz21k8i87w9dikxmpmqqy1svc8pqkk-ViennaRNA-2.5.1.tar.gz.drv' on farm.numtide.com:50051 ViennaRNA-2.5.1.tar.gz> elastic-arm-4e524f5e: building f0pz21k8i87w9dikxmpmqqy1svc8pqkk-ViennaRNA-2.5.1.tar.gz.drv ViennaRNA-2.5.1.tar.gz> ViennaRNA-2.5.1.tar.gz> trying https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ViennaRNA-2.5.1.tar.gz ViennaRNA-2.5.1.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current ViennaRNA-2.5.1.tar.gz> Dload Upload Total Spent Left Speed ViennaRNA-2.5.1.tar.gz> 100 55.3M 100 55.3M 0 0 116M 0 --:--:-- --:--:-- --:--:-- 116M building '/nix/store/wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv' on 'grpc://farm.numtide.com:50051?client-cert=/run/secrets/vars/per-machine/bld1/nix-farm-ci/crt&client-key=/run/secrets/vars/per-machine/bld1/nix-farm-ci/key&connect-timeout=21&system=aarch64-linux' building '/nix/store/wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv' on farm.numtide.com:50051 ViennaRNA-2.5.1> elastic-arm-0f89b4f7: building wq993s0qjwlqypi13rznfmz15inzqgwq-ViennaRNA-2.5.1.drv ViennaRNA-2.5.1> unpacking sources ViennaRNA-2.5.1> unpacking source archive /nix/store/mxbfkn8wrd1g1qpifs1s2c3knhrgrc9v-ViennaRNA-2.5.1.tar.gz ViennaRNA-2.5.1> source root is ViennaRNA-2.5.1 ViennaRNA-2.5.1> setting SOURCE_DATE_EPOCH to timestamp 1654156553 of file ViennaRNA-2.5.1/src/RNAforester/g2-0.72/src/g2_virtual_device.h ViennaRNA-2.5.1> patching sources ViennaRNA-2.5.1> updateAutotoolsGnuConfigScriptsPhase ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./config/config.sub ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.sub ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.sub ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.sub ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./config/config.guess ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/RNAforester/g2-0.72/config.guess ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/RNAlocmin/config.guess ViennaRNA-2.5.1> Updating Autotools / GNU config script to a newer upstream version: ./src/Kinfold/config.guess ViennaRNA-2.5.1> configuring ViennaRNA-2.5.1> fixing libtool script ./config/ltmain.sh ViennaRNA-2.5.1> ./configure ViennaRNA-2.5.1> configure flags: --disable-static --disable-dependency-tracking --prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 --with-cluster --with-kinwalker ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the C compiler works... yes ViennaRNA-2.5.1> checking for C compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... yes ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> checking for wchar.h... yes ViennaRNA-2.5.1> checking for minix/config.h... no ViennaRNA-2.5.1> checking whether it is safe to define __EXTENSIONS__... yes ViennaRNA-2.5.1> checking whether _XOPEN_SOURCE should be defined... no ViennaRNA-2.5.1> checking whether make supports nested variables... yes ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking whether build environment is sane... yes ViennaRNA-2.5.1> checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p ViennaRNA-2.5.1> checking for gawk... gawk ViennaRNA-2.5.1> checking whether make sets $(MAKE)... yes ViennaRNA-2.5.1> checking whether make supports the include directive... yes (GNU style) ViennaRNA-2.5.1> checking whether UID '1000' is supported by ustar format... yes ViennaRNA-2.5.1> checking whether GID '100' is supported by ustar format... yes ViennaRNA-2.5.1> checking how to create a ustar tar archive... gnutar ViennaRNA-2.5.1> checking dependency style of gcc... none ViennaRNA-2.5.1> checking if malloc debugging is wanted... no ViennaRNA-2.5.1> checking build system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking host system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking whether the compiler supports GNU C++... yes ViennaRNA-2.5.1> checking whether g++ accepts -g... yes ViennaRNA-2.5.1> checking for g++ option to enable C++11 features... none needed ViennaRNA-2.5.1> checking dependency style of g++... none ViennaRNA-2.5.1> checking how to run the C++ preprocessor... g++ -E ViennaRNA-2.5.1> checking for gcc... (cached) gcc ViennaRNA-2.5.1> checking whether the compiler supports GNU C... (cached) yes ViennaRNA-2.5.1> checking whether gcc accepts -g... (cached) yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... (cached) none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... (cached) yes ViennaRNA-2.5.1> checking how to run the C preprocessor... gcc -E ViennaRNA-2.5.1> checking the archiver (ar) interface... ar ViennaRNA-2.5.1> checking whether make sets $(MAKE)... (cached) yes ViennaRNA-2.5.1> checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep ViennaRNA-2.5.1> checking for a sed that does not truncate output... /nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin/sed ViennaRNA-2.5.1> checking for gawk... (cached) gawk ViennaRNA-2.5.1> checking whether ln -s works... yes ViennaRNA-2.5.1> checking how to print strings... printf ViennaRNA-2.5.1> checking for a sed that does not truncate output... (cached) /nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin/sed ViennaRNA-2.5.1> checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E ViennaRNA-2.5.1> checking for fgrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -F ViennaRNA-2.5.1> checking for ld used by gcc... ld ViennaRNA-2.5.1> checking if the linker (ld) is GNU ld... yes ViennaRNA-2.5.1> checking for BSD- or MS-compatible name lister (nm)... nm ViennaRNA-2.5.1> checking the name lister (nm) interface... BSD nm ViennaRNA-2.5.1> checking the maximum length of command line arguments... 1572864 ViennaRNA-2.5.1> checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop ViennaRNA-2.5.1> checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop ViennaRNA-2.5.1> checking for ld option to reload object files... -r ViennaRNA-2.5.1> checking for file... file ViennaRNA-2.5.1> checking for objdump... objdump ViennaRNA-2.5.1> checking how to recognize dependent libraries... (cached) pass_all ViennaRNA-2.5.1> checking for dlltool... no ViennaRNA-2.5.1> checking how to associate runtime and link libraries... printf %s\n ViennaRNA-2.5.1> checking for archiver @FILE support... @ ViennaRNA-2.5.1> checking for strip... strip ViennaRNA-2.5.1> checking for ranlib... ranlib ViennaRNA-2.5.1> checking command to parse nm output from gcc object... ok ViennaRNA-2.5.1> checking for sysroot... no ViennaRNA-2.5.1> checking for a working dd... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/dd ViennaRNA-2.5.1> checking how to truncate binary pipes... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/dd bs=4096 count=1 ViennaRNA-2.5.1> checking for mt... no ViennaRNA-2.5.1> checking if : is a manifest tool... no ViennaRNA-2.5.1> checking for dlfcn.h... yes ViennaRNA-2.5.1> checking for objdir... .libs ViennaRNA-2.5.1> checking if gcc supports -fno-rtti -fno-exceptions... no ViennaRNA-2.5.1> checking for gcc option to produce PIC... -fPIC -DPIC ViennaRNA-2.5.1> checking if gcc PIC flag -fPIC -DPIC works... yes ViennaRNA-2.5.1> checking if gcc static flag -static works... no ViennaRNA-2.5.1> checking if gcc supports -c -o file.o... yes ViennaRNA-2.5.1> checking if gcc supports -c -o file.o... (cached) yes ViennaRNA-2.5.1> checking whether the gcc linker (ld) supports shared libraries... yes ViennaRNA-2.5.1> checking whether -lc should be explicitly linked in... no ViennaRNA-2.5.1> checking dynamic linker characteristics... GNU/Linux ld.so ViennaRNA-2.5.1> checking how to hardcode library paths into programs... immediate ViennaRNA-2.5.1> checking whether stripping libraries is possible... yes ViennaRNA-2.5.1> checking if libtool supports shared libraries... yes ViennaRNA-2.5.1> checking whether to build shared libraries... yes ViennaRNA-2.5.1> checking whether to build static libraries... no ViennaRNA-2.5.1> checking how to run the C++ preprocessor... g++ -E ViennaRNA-2.5.1> checking for ld used by g++... ld ViennaRNA-2.5.1> checking if the linker (ld) is GNU ld... yes ViennaRNA-2.5.1> checking whether the g++ linker (ld) supports shared libraries... yes ViennaRNA-2.5.1> checking for g++ option to produce PIC... -fPIC -DPIC ViennaRNA-2.5.1> checking if g++ PIC flag -fPIC -DPIC works... yes ViennaRNA-2.5.1> checking if g++ static flag -static works... no ViennaRNA-2.5.1> checking if g++ supports -c -o file.o... yes ViennaRNA-2.5.1> checking if g++ supports -c -o file.o... (cached) yes ViennaRNA-2.5.1> checking whether the g++ linker (ld) supports shared libraries... yes ViennaRNA-2.5.1> checking dynamic linker characteristics... (cached) GNU/Linux ld.so ViennaRNA-2.5.1> checking how to hardcode library paths into programs... immediate ViennaRNA-2.5.1> checking for exp in -lm... yes ViennaRNA-2.5.1> ./configure: line 19107: #include: command not found ViennaRNA-2.5.1> checking for egrep... (cached) /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E ViennaRNA-2.5.1> checking for _Bool... yes ViennaRNA-2.5.1> checking for stdbool.h that conforms to C99... yes ViennaRNA-2.5.1> checking for malloc.h... yes ViennaRNA-2.5.1> checking for float.h... yes ViennaRNA-2.5.1> checking for limits.h... yes ViennaRNA-2.5.1> checking for stdlib.h... (cached) yes ViennaRNA-2.5.1> checking for string.h... (cached) yes ViennaRNA-2.5.1> checking for strings.h... (cached) yes ViennaRNA-2.5.1> checking for unistd.h... (cached) yes ViennaRNA-2.5.1> checking for math.h... yes ViennaRNA-2.5.1> checking for stdarg.h... yes ViennaRNA-2.5.1> checking for GNU libc compatible malloc... yes ViennaRNA-2.5.1> checking for GNU libc compatible realloc... yes ViennaRNA-2.5.1> checking for working strtod... yes ViennaRNA-2.5.1> checking for floor... yes ViennaRNA-2.5.1> checking for strdup... yes ViennaRNA-2.5.1> checking for strstr... yes ViennaRNA-2.5.1> checking for strchr... yes ViennaRNA-2.5.1> checking for strrchr... yes ViennaRNA-2.5.1> checking for strstr... (cached) yes ViennaRNA-2.5.1> checking for strtol... yes ViennaRNA-2.5.1> checking for strtoul... yes ViennaRNA-2.5.1> checking for pow... yes ViennaRNA-2.5.1> checking for rint... yes ViennaRNA-2.5.1> checking for sqrt... yes ViennaRNA-2.5.1> checking for erand48... yes ViennaRNA-2.5.1> checking for memset... yes ViennaRNA-2.5.1> checking for memmove... yes ViennaRNA-2.5.1> checking for erand48... (cached) yes ViennaRNA-2.5.1> checking for asprintf... yes ViennaRNA-2.5.1> checking for vasprintf... yes ViennaRNA-2.5.1> checking for an ANSI C-conforming const... yes ViennaRNA-2.5.1> checking for size_t... yes ViennaRNA-2.5.1> checking for inline... inline ViennaRNA-2.5.1> checking for pdflatex... no ViennaRNA-2.5.1> checking for bibtex... no ViennaRNA-2.5.1> checking for makeindex... no ViennaRNA-2.5.1> checking for pkg-config... no ViennaRNA-2.5.1> checking for C compiler vendor... gnu ViennaRNA-2.5.1> checking for perl... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl ViennaRNA-2.5.1> checking whether C compiler accepts -fno-strict-aliasing... yes ViennaRNA-2.5.1> checking whether C++ compiler accepts -fno-strict-aliasing... yes ViennaRNA-2.5.1> checking whether the linker accepts -fno-strict-aliasing... yes ViennaRNA-2.5.1> checking whether the C compiler allows unnamed unions of unnamed structs... yes ViennaRNA-2.5.1> checking whether the C++ compiler allows unnamed unions of unnamed structs... yes ViennaRNA-2.5.1> checking whether C compiler accepts -flto... yes ViennaRNA-2.5.1> checking whether C++ compiler accepts -flto... yes ViennaRNA-2.5.1> checking whether C compiler accepts -ffat-lto-objects... yes ViennaRNA-2.5.1> checking whether C++ compiler accepts -ffat-lto-objects... yes ViennaRNA-2.5.1> configure: WARNING: Trying to re-set ar/ranlib/nm to compiler specific wrappers ViennaRNA-2.5.1> checking for gcc-ar... gcc-ar ViennaRNA-2.5.1> checking for gcc-ranlib... gcc-ranlib ViennaRNA-2.5.1> checking for gcc-nm... gcc-nm ViennaRNA-2.5.1> checking whether the linker supports Link time Optimization (LTO)... yes ViennaRNA-2.5.1> checking for ./src/libsvm-3.25/svm.cpp... yes ViennaRNA-2.5.1> checking for ./src/libsvm-3.25/svm.h... yes ViennaRNA-2.5.1> checking for ./src/json/json.c... yes ViennaRNA-2.5.1> checking for ./src/json/json.h... yes ViennaRNA-2.5.1> checking for cblas_dgemm in -lgslcblas... yes ViennaRNA-2.5.1> checking for gsl_blas_dgemm in -lgsl... yes ViennaRNA-2.5.1> checking for OpenMP flag of C compiler... -fopenmp ViennaRNA-2.5.1> checking for OpenMP flag of C++ compiler... -fopenmp ViennaRNA-2.5.1> checking whether gcc is Clang... no ViennaRNA-2.5.1> checking whether pthreads work with "-pthread" and "-lpthread"... yes ViennaRNA-2.5.1> checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE ViennaRNA-2.5.1> checking whether more special flags are required for pthreads... no ViennaRNA-2.5.1> checking for PTHREAD_PRIO_INHERIT... yes ViennaRNA-2.5.1> checking compiler support for AVX 512 instructions... no ViennaRNA-2.5.1> checking compiler support for SSE 4.1 instructions... no ViennaRNA-2.5.1> checking whether C compiler accepts -ftree-vectorize... yes ViennaRNA-2.5.1> checking for mpfr.h... yes ViennaRNA-2.5.1> checking whether we can compile programs with mpfr support... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/plotting/naview/naview.c... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/plotting/naview/naview.h... yes ViennaRNA-2.5.1> checking for ./interfaces/Makefile.am... yes ViennaRNA-2.5.1> checking for swig... no ViennaRNA-2.5.1> checking for swig2.0... no ViennaRNA-2.5.1> checking for ./interfaces/Perl/Makefile.am... yes ViennaRNA-2.5.1> checking for ./interfaces/Perl/RNA_wrap.cpp... yes ViennaRNA-2.5.1> checking for ./interfaces/Perl/RNA.pm... yes ViennaRNA-2.5.1> checking for /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl... (cached) /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl ViennaRNA-2.5.1> checking for Perl prefix... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0 ViennaRNA-2.5.1> checking for Perl siteprefix... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0 ViennaRNA-2.5.1> checking for Perl vendorprefix... ViennaRNA-2.5.1> checking for Perl extension include path... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/5.36.0/aarch64-linux-thread-multi/CORE ViennaRNA-2.5.1> checking for Perl extension target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi ViennaRNA-2.5.1> checking for architecture dependent Perl extension site target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi ViennaRNA-2.5.1> checking for architecture dependent Perl extension vendor target directory... ViennaRNA-2.5.1> checking for architecture independent Perl extension site target directory... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/lib/perl5/site_perl/5.36.0 ViennaRNA-2.5.1> checking for architecture independent Perl extension vendor target directory... ViennaRNA-2.5.1> checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/no-such-path/include ViennaRNA-2.5.1> checking for Perl extensions linker flags... -shared -O2 -L/nix/store/hc3db8k7svnz6zyhhqx8srjabkb6ij1q-glibc-2.35-224/lib -fstack-protector-strong ViennaRNA-2.5.1> checking for Perl dynamic library extension... .so ViennaRNA-2.5.1> checking for ./interfaces/Python2/Makefile.am... yes ViennaRNA-2.5.1> checking for ./interfaces/Python2/RNA_wrap.cpp... yes ViennaRNA-2.5.1> checking for ./interfaces/Python2/RNA.py... yes ViennaRNA-2.5.1> checking for python2... no ViennaRNA-2.5.1> checking for python2.7... no ViennaRNA-2.5.1> checking for python2.6... no ViennaRNA-2.5.1> checking for ./interfaces/Python/Makefile.am... yes ViennaRNA-2.5.1> checking for ./interfaces/Python/RNA_wrap.cpp... yes ViennaRNA-2.5.1> checking for ./interfaces/Python/RNA.py... yes ViennaRNA-2.5.1> checking for python3... /nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin/python3 ViennaRNA-2.5.1> checking for Python3 include path... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives ViennaRNA-2.5.1> :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead ViennaRNA-2.5.1> /nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/include/python3.10 ViennaRNA-2.5.1> checking for /nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/include/python3.10/Python.h... yes ViennaRNA-2.5.1> checking for Python3 ldflags... ViennaRNA-2.5.1> checking for Python3 extension linker... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives ViennaRNA-2.5.1> :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead ViennaRNA-2.5.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.5.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.9/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.4/lib -L/nix/store/x1yyrplgldzg8hvbaz5za8v0vs6ig1yp-libxcrypt-4.4.33/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.23/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.40.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.1p2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.3-p20220507/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.0.7/lib -L/nix/store/ni761n3nvd0i6gy8nh8h3apjbvq9svdn-tzdata-2022g/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.5.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.9/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.4/lib -L/nix/store/x1yyrplgldzg8hvbaz5za8v0vs6ig1yp-libxcrypt-4.4.33/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.23/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.40.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.1p2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.3-p20220507/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.0.7/lib -L/nix/store/ni761n3nvd0i6gy8nh8h3apjbvq9svdn-tzdata-2022g/lib ViennaRNA-2.5.1> checking for directory to install Python3 scripts in... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives ViennaRNA-2.5.1> :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead ViennaRNA-2.5.1> ${prefix}/lib/python3.10/site-packages ViennaRNA-2.5.1> checking for directory to install architecture dependent python3 things in... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives ViennaRNA-2.5.1> :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead ViennaRNA-2.5.1> ${exec_prefix}/lib/python3.10/site-packages ViennaRNA-2.5.1> checking for Python3 module extension... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives ViennaRNA-2.5.1> :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead ViennaRNA-2.5.1> .cpython-310-aarch64-linux-gnu.so ViennaRNA-2.5.1> checking for Python3 tag for cached compiled scripts... cpython-310 ViennaRNA-2.5.1> checking for Python3 extension of cached and optimized bytecode... cpython-310.opt-1.pyc ViennaRNA-2.5.1> checking for doxygen... no ViennaRNA-2.5.1> checking for dot... no ViennaRNA-2.5.1> checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/egrep ViennaRNA-2.5.1> checking for perl... /nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin/perl ViennaRNA-2.5.1> checking for doc/RNAlib-2.5.1.pdf... yes ViennaRNA-2.5.1> checking for doc/html/index.html... yes ViennaRNA-2.5.1> checking for htlatex... no ViennaRNA-2.5.1> configure: WARNING: Could not find pdflatex! ViennaRNA-2.5.1> configure: WARNING: deactivating automatic (re)generation of tutorial! ViennaRNA-2.5.1> checking for RNA-Tutorial/RNA-tutorial-2.5.1.pdf... yes ViennaRNA-2.5.1> configure: WARNING: Could not find pdflatex! ViennaRNA-2.5.1> configure: WARNING: deactivating automatic (re)generation of CLA! ViennaRNA-2.5.1> checking for doc/CLA/ViennaRNA-CLA-Individual.pdf... yes ViennaRNA-2.5.1> checking for doc/CLA/ViennaRNA-CLA-Entity.pdf... yes ViennaRNA-2.5.1> checking for CHECK... no ViennaRNA-2.5.1> configure: WARNING: check not found -- will not build C-library Unit tests ViennaRNA-2.5.1> checking for diff... /nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin/diff ViennaRNA-2.5.1> checking for xxd... no ViennaRNA-2.5.1> checking for gengetopt... no ViennaRNA-2.5.1> checking for help2man... no ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/structure_plot_macro_base.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/structure_plot_macro_extras.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_base.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_turn.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_sd.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_ud.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_sc_motifs.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/dot_plot_macro_linear_data.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/postscript/aln_macro_base.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/svg/structure_plot_header.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/svg/structure_plot_footer.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/dna_mathews1999.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/dna_mathews2004.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/rna_andronescu2007.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/rna_langdon2018.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/rna_misc_special_hairpins.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/rna_turner1999.hex... yes ViennaRNA-2.5.1> checking for ./src/ViennaRNA/static/misc/rna_turner2004.hex... yes ViennaRNA-2.5.1> checking whether g++ supports C++11 features with -std=c++11... yes ViennaRNA-2.5.1> checking for ./src/dlib-19.23/dlib/all/source.cpp... yes ViennaRNA-2.5.1> checking for ./src/Kinfold/Makefile.am... yes ViennaRNA-2.5.1> checking for ./src/RNAforester/Makefile.am... yes ViennaRNA-2.5.1> checking for ./src/Cluster/Makefile.am... yes ViennaRNA-2.5.1> checking for ./src/Kinwalker/Makefile.am... yes ViennaRNA-2.5.1> checking for ./src/RNAlocmin/Makefile.am... yes ViennaRNA-2.5.1> checking that generated files are newer than configure... done ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating packaging/macosx/Makefile ViennaRNA-2.5.1> config.status: creating packaging/macosx/Distribution.xml ViennaRNA-2.5.1> config.status: creating packaging/macosx/resources/welcome.txt ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/plotting/naview/Makefile ViennaRNA-2.5.1> config.status: creating interfaces/Perl/Makefile ViennaRNA-2.5.1> config.status: creating interfaces/Perl/version.i ViennaRNA-2.5.1> config.status: creating interfaces/Python/Makefile ViennaRNA-2.5.1> config.status: creating interfaces/Python/version.i ViennaRNA-2.5.1> config.status: creating tests/Makefile ViennaRNA-2.5.1> config.status: creating tests/RNApath.py ViennaRNA-2.5.1> config.status: creating tests/RNAHelpers.pm ViennaRNA-2.5.1> config.status: creating tests/test-env.sh ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/static/templates_postscript.h ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/static/templates_svg.h ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/static/energy_parameter_sets.h ViennaRNA-2.5.1> config.status: creating src/Cluster/Makefile ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/vrna_config.h ViennaRNA-2.5.1> config.status: creating misc/Makefile ViennaRNA-2.5.1> config.status: creating interfaces/Makefile ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating RNAlib2.pc ViennaRNA-2.5.1> config.status: creating src/Utils/Makefile ViennaRNA-2.5.1> config.status: creating src/bin/Makefile ViennaRNA-2.5.1> config.status: creating src/Makefile ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/Makefile ViennaRNA-2.5.1> config.status: creating src/ViennaRNA/static/Makefile ViennaRNA-2.5.1> config.status: creating man/Makefile ViennaRNA-2.5.1> config.status: creating doc/Makefile ViennaRNA-2.5.1> config.status: creating doc/CLA/Makefile ViennaRNA-2.5.1> config.status: creating RNA-Tutorial/Makefile ViennaRNA-2.5.1> config.status: creating man/cmdlopt.sh ViennaRNA-2.5.1> config.status: creating examples/Makefile ViennaRNA-2.5.1> config.status: creating packaging/viennarna.spec ViennaRNA-2.5.1> config.status: creating packaging/PKGBUILD ViennaRNA-2.5.1> config.status: creating packaging/win_installer_archlinux_i686.nsi ViennaRNA-2.5.1> config.status: creating packaging/win_installer_archlinux_x86_64.nsi ViennaRNA-2.5.1> config.status: creating packaging/win_installer_fedora_i686.nsi ViennaRNA-2.5.1> config.status: creating packaging/win_installer_fedora_x86_64.nsi ViennaRNA-2.5.1> config.status: creating config.h ViennaRNA-2.5.1> config.status: executing depfiles commands ViennaRNA-2.5.1> config.status: executing libtool commands ViennaRNA-2.5.1> === configuring in src/Kinfold (/build/ViennaRNA-2.5.1/src/Kinfold) ViennaRNA-2.5.1> configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. ViennaRNA-2.5.1> checking whether make supports nested variables... yes ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking whether build environment is sane... yes ViennaRNA-2.5.1> checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p ViennaRNA-2.5.1> checking for gawk... gawk ViennaRNA-2.5.1> checking whether make sets $(MAKE)... yes ViennaRNA-2.5.1> checking if malloc debugging is wanted... no ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the C compiler works... yes ViennaRNA-2.5.1> checking for C compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... yes ViennaRNA-2.5.1> checking whether make supports the include directive... yes (GNU style) ViennaRNA-2.5.1> checking dependency style of gcc... none ViennaRNA-2.5.1> checking build system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking host system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking for strdup... yes ViennaRNA-2.5.1> checking for memset... yes ViennaRNA-2.5.1> checking for strchr... yes ViennaRNA-2.5.1> checking for pkg-config... no ViennaRNA-2.5.1> checking for VRNA... yes ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> ./configure: line 4958: #include: command not found ViennaRNA-2.5.1> checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep ViennaRNA-2.5.1> checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E ViennaRNA-2.5.1> checking for stdlib.h... (cached) yes ViennaRNA-2.5.1> checking for string.h... (cached) yes ViennaRNA-2.5.1> checking for strings.h... (cached) yes ViennaRNA-2.5.1> checking for unistd.h... (cached) yes ViennaRNA-2.5.1> checking for exp in -lm... yes ViennaRNA-2.5.1> checking for an ANSI C-conforming const... yes ViennaRNA-2.5.1> checking that generated files are newer than configure... done ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating Example/Makefile ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating config.h ViennaRNA-2.5.1> config.status: executing depfiles commands ViennaRNA-2.5.1> === configuring in src/RNAforester (/build/ViennaRNA-2.5.1/src/RNAforester) ViennaRNA-2.5.1> configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. ViennaRNA-2.5.1> checking whether make supports nested variables... yes ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking whether build environment is sane... yes ViennaRNA-2.5.1> checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p ViennaRNA-2.5.1> checking for gawk... gawk ViennaRNA-2.5.1> checking whether make sets $(MAKE)... yes ViennaRNA-2.5.1> checking whether the C++ compiler works... yes ViennaRNA-2.5.1> checking for C++ compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C++... yes ViennaRNA-2.5.1> checking whether g++ accepts -g... yes ViennaRNA-2.5.1> checking for g++ option to enable C++11 features... none needed ViennaRNA-2.5.1> checking whether make supports the include directive... yes (GNU style) ViennaRNA-2.5.1> checking dependency style of g++... none ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... yes ViennaRNA-2.5.1> checking dependency style of gcc... none ViennaRNA-2.5.1> checking for flex... no ViennaRNA-2.5.1> checking for lex... no ViennaRNA-2.5.1> checking for bison... no ViennaRNA-2.5.1> checking for byacc... no ViennaRNA-2.5.1> checking for g++ option to support OpenMP... -fopenmp ViennaRNA-2.5.1> checking for pkg-config... no ViennaRNA-2.5.1> checking for VRNA... yes ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> ./configure: line 5995: #include: command not found ViennaRNA-2.5.1> checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep ViennaRNA-2.5.1> checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E ViennaRNA-2.5.1> checking for g2.h... yes ViennaRNA-2.5.1> checking for an ANSI C-conforming const... yes ViennaRNA-2.5.1> checking for inline... inline ViennaRNA-2.5.1> checking for size_t... yes ViennaRNA-2.5.1> checking that generated files are newer than configure... done ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating src/Makefile ViennaRNA-2.5.1> config.status: creating man/Makefile ViennaRNA-2.5.1> config.status: creating config.h ViennaRNA-2.5.1> config.status: executing depfiles commands ViennaRNA-2.5.1> === configuring in g2-0.72 (/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72) ViennaRNA-2.5.1> configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. ViennaRNA-2.5.1> checking build system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking host system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the C compiler works... yes ViennaRNA-2.5.1> checking for C compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking how to run the C preprocessor... gcc -E ViennaRNA-2.5.1> checking whether the compiler supports GNU C++... yes ViennaRNA-2.5.1> checking whether g++ accepts -g... yes ViennaRNA-2.5.1> checking for g++ option to enable C++11 features... none needed ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking for find... find ViennaRNA-2.5.1> checking for makedepend... : ViennaRNA-2.5.1> checking for dlopen in -ldl... yes ViennaRNA-2.5.1> checking for X... no ViennaRNA-2.5.1> checking for main in -lm... yes ViennaRNA-2.5.1> checking for main in -lX11... no ViennaRNA-2.5.1> checking for main in -lXext... no ViennaRNA-2.5.1> checking for main in -lgd... no ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> ./configure: line 5714: #include: command not found ViennaRNA-2.5.1> checking for grep that handles long lines and -e... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep ViennaRNA-2.5.1> checking for egrep... /nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin/grep -E ViennaRNA-2.5.1> checking for limits.h... yes ViennaRNA-2.5.1> ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating demo/Makefile ViennaRNA-2.5.1> config.status: creating g2_perl/Makefile.PL ViennaRNA-2.5.1> config.status: creating g2_python/Makefile ViennaRNA-2.5.1> ViennaRNA-2.5.1> Supported devices: ViennaRNA-2.5.1> PostScript ViennaRNA-2.5.1> FIG ViennaRNA-2.5.1> ViennaRNA-2.5.1> Unsupported devices: ViennaRNA-2.5.1> X11 ViennaRNA-2.5.1> Xdbe ViennaRNA-2.5.1> Win32 ViennaRNA-2.5.1> GD ViennaRNA-2.5.1> GD (GIF) ViennaRNA-2.5.1> ViennaRNA-2.5.1> Run 'make depend' to create dependencies. ViennaRNA-2.5.1> ViennaRNA-2.5.1> === configuring in src/Kinwalker (/build/ViennaRNA-2.5.1/src/Kinwalker) ViennaRNA-2.5.1> configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. ViennaRNA-2.5.1> checking whether make supports nested variables... yes ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking whether build environment is sane... yes ViennaRNA-2.5.1> checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p ViennaRNA-2.5.1> checking for gawk... gawk ViennaRNA-2.5.1> checking whether make sets $(MAKE)... yes ViennaRNA-2.5.1> checking whether the C++ compiler works... yes ViennaRNA-2.5.1> checking for C++ compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C++... yes ViennaRNA-2.5.1> checking whether g++ accepts -g... yes ViennaRNA-2.5.1> checking for g++ option to enable C++11 features... none needed ViennaRNA-2.5.1> checking whether make supports the include directive... yes (GNU style) ViennaRNA-2.5.1> checking dependency style of g++... none ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... yes ViennaRNA-2.5.1> checking dependency style of gcc... none ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> checking for malloc.h... yes ViennaRNA-2.5.1> checking for strings.h... (cached) yes ViennaRNA-2.5.1> checking for unistd.h... (cached) yes ViennaRNA-2.5.1> checking for inline... inline ViennaRNA-2.5.1> checking for pkg-config... no ViennaRNA-2.5.1> checking for VRNA... yes ViennaRNA-2.5.1> checking that generated files are newer than configure... done ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating man/Makefile ViennaRNA-2.5.1> config.status: creating config.h ViennaRNA-2.5.1> config.status: executing depfiles commands ViennaRNA-2.5.1> === configuring in src/RNAlocmin (/build/ViennaRNA-2.5.1/src/RNAlocmin) ViennaRNA-2.5.1> configure: running /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ./configure --disable-option-checking '--prefix=/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1' '--disable-static' '--disable-dependency-tracking' '--with-cluster' '--with-kinwalker' 'CC=gcc' 'CXX=g++' 'CFLAGS=-g -O2' 'CXXFLAGS=-g -O2' 'AR=gcc-ar' 'RANLIB=gcc-ranlib' 'NM=gcc-nm' 'VRNA_CFLAGS=-I$(top_srcdir)/../../src/ViennaRNA -I$(top_srcdir)/../../src -DVRNA_WITH_NAVIEW_LAYOUT' 'VRNA_LIBS=-fno-strict-aliasing -flto -L$(top_builddir)/../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lpthread -lmpfr -lgmp -lstdc++' --cache-file=/dev/null --srcdir=. ViennaRNA-2.5.1> checking for gcc... gcc ViennaRNA-2.5.1> checking whether the C compiler works... yes ViennaRNA-2.5.1> checking for C compiler default output file name... a.out ViennaRNA-2.5.1> checking for suffix of executables... ViennaRNA-2.5.1> checking whether we are cross compiling... no ViennaRNA-2.5.1> checking for suffix of object files... o ViennaRNA-2.5.1> checking whether the compiler supports GNU C... yes ViennaRNA-2.5.1> checking whether gcc accepts -g... yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... yes ViennaRNA-2.5.1> checking for stdio.h... yes ViennaRNA-2.5.1> checking for stdlib.h... yes ViennaRNA-2.5.1> checking for string.h... yes ViennaRNA-2.5.1> checking for inttypes.h... yes ViennaRNA-2.5.1> checking for stdint.h... yes ViennaRNA-2.5.1> checking for strings.h... yes ViennaRNA-2.5.1> checking for sys/stat.h... yes ViennaRNA-2.5.1> checking for sys/types.h... yes ViennaRNA-2.5.1> checking for unistd.h... yes ViennaRNA-2.5.1> checking for wchar.h... yes ViennaRNA-2.5.1> checking for minix/config.h... no ViennaRNA-2.5.1> checking whether it is safe to define __EXTENSIONS__... yes ViennaRNA-2.5.1> checking whether _XOPEN_SOURCE should be defined... no ViennaRNA-2.5.1> checking whether make supports nested variables... yes ViennaRNA-2.5.1> checking for a BSD-compatible install... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ViennaRNA-2.5.1> checking whether build environment is sane... yes ViennaRNA-2.5.1> checking for a race-free mkdir -p... /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p ViennaRNA-2.5.1> checking for gawk... gawk ViennaRNA-2.5.1> checking whether make sets $(MAKE)... yes ViennaRNA-2.5.1> checking whether make supports the include directive... yes (GNU style) ViennaRNA-2.5.1> checking dependency style of gcc... none ViennaRNA-2.5.1> checking build system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking host system type... aarch64-unknown-linux-gnu ViennaRNA-2.5.1> checking whether the compiler supports GNU C++... yes ViennaRNA-2.5.1> checking whether g++ accepts -g... yes ViennaRNA-2.5.1> checking for g++ option to enable C++11 features... none needed ViennaRNA-2.5.1> checking dependency style of g++... none ViennaRNA-2.5.1> checking how to run the C++ preprocessor... g++ -E ViennaRNA-2.5.1> checking for gcc... (cached) gcc ViennaRNA-2.5.1> checking whether the compiler supports GNU C... (cached) yes ViennaRNA-2.5.1> checking whether gcc accepts -g... (cached) yes ViennaRNA-2.5.1> checking for gcc option to enable C11 features... (cached) none needed ViennaRNA-2.5.1> checking whether gcc understands -c and -o together... (cached) yes ViennaRNA-2.5.1> checking how to run the C preprocessor... gcc -E ViennaRNA-2.5.1> checking whether g++ supports C++11 features by default... yes ViennaRNA-2.5.1> checking for strchr... yes ViennaRNA-2.5.1> checking for strdup... yes ViennaRNA-2.5.1> checking for strtol... yes ViennaRNA-2.5.1> checking for limits.h... yes ViennaRNA-2.5.1> checking for _Bool... yes ViennaRNA-2.5.1> checking for stdbool.h that conforms to C99... yes ViennaRNA-2.5.1> checking for inline... inline ViennaRNA-2.5.1> checking for GNU libc compatible malloc... yes ViennaRNA-2.5.1> checking for GNU libc compatible realloc... yes ViennaRNA-2.5.1> checking for working strtod... yes ViennaRNA-2.5.1> checking for size_t... yes ViennaRNA-2.5.1> checking for pkg-config... no ViennaRNA-2.5.1> checking for VRNA... yes ViennaRNA-2.5.1> checking that generated files are newer than configure... done ViennaRNA-2.5.1> configure: creating ./config.status ViennaRNA-2.5.1> config.status: creating Makefile ViennaRNA-2.5.1> config.status: creating config.h ViennaRNA-2.5.1> config.status: executing depfiles commands ViennaRNA-2.5.1> configure: ViennaRNA-2.5.1> ViennaRNA-2.5.1> ====================================== ViennaRNA-2.5.1> ViennaRNA Package 2.5.1 ViennaRNA-2.5.1> ====================================== ViennaRNA-2.5.1> ViennaRNA-2.5.1> Successfully configured with the following options: ViennaRNA-2.5.1> ViennaRNA-2.5.1> Sub Packages ViennaRNA-2.5.1> ------------ ViennaRNA-2.5.1> * Kinfold : yes ViennaRNA-2.5.1> * RNAforester : yes ViennaRNA-2.5.1> * Analyse{Dists,Seqs} : yes ViennaRNA-2.5.1> * RNAlocmin : yes ViennaRNA-2.5.1> * Kinwalker : yes ViennaRNA-2.5.1> ViennaRNA-2.5.1> Extra Libraries ViennaRNA-2.5.1> --------------- ViennaRNA-2.5.1> * Support Vector Machine : yes ViennaRNA-2.5.1> * GNU Scientific Library : yes ViennaRNA-2.5.1> * GNU MPFR : yes ViennaRNA-2.5.1> * JSON : yes ViennaRNA-2.5.1> ViennaRNA-2.5.1> Features ViennaRNA-2.5.1> -------- ViennaRNA-2.5.1> * Use hash for NR Sampling : no ViennaRNA-2.5.1> * C11 features : yes ViennaRNA-2.5.1> * TTY colors : yes ViennaRNA-2.5.1> * Float Precision(PF} : no ViennaRNA-2.5.1> * Deprecation Warnings : no ViennaRNA-2.5.1> ViennaRNA-2.5.1> Optimizations ViennaRNA-2.5.1> ------------- ViennaRNA-2.5.1> * Auto Vectorization : yes ViennaRNA-2.5.1> * Explicit SIMD Extension : yes ViennaRNA-2.5.1> * Link Time Optimization : yes ViennaRNA-2.5.1> * POSIX Threads : yes ViennaRNA-2.5.1> * OpenMP : yes ViennaRNA-2.5.1> ViennaRNA-2.5.1> Scripting Language Interfaces ViennaRNA-2.5.1> ----------------------------- ViennaRNA-2.5.1> * Perl 5 : yes ViennaRNA-2.5.1> * Python 3.x : yes ViennaRNA-2.5.1> * Python 2.x : no ViennaRNA-2.5.1> ViennaRNA-2.5.1> Documentation ViennaRNA-2.5.1> ------------- ViennaRNA-2.5.1> * Reference Manual (PDF) : yes ViennaRNA-2.5.1> * Reference Manual (HTML) : yes ViennaRNA-2.5.1> * Tutorial (PDF) : yes ViennaRNA-2.5.1> * Tutorial (HTML) : no ViennaRNA-2.5.1> * CLA (PDF) : yes ViennaRNA-2.5.1> ViennaRNA-2.5.1> Unit Tests ViennaRNA-2.5.1> ---------- ViennaRNA-2.5.1> * Executable Programs : yes ViennaRNA-2.5.1> * C-Library : no ViennaRNA-2.5.1> * Perl 5 Interface : yes ViennaRNA-2.5.1> * Python 3.x Interface : yes ViennaRNA-2.5.1> * Python 2.x Interface : no ViennaRNA-2.5.1> ViennaRNA-2.5.1> MacOS X ViennaRNA-2.5.1> ------- ViennaRNA-2.5.1> * Universal Binary : no ViennaRNA-2.5.1> * Installer : no ViennaRNA-2.5.1> * SDK : no ViennaRNA-2.5.1> ViennaRNA-2.5.1> Install Directories ViennaRNA-2.5.1> ------------------- ViennaRNA-2.5.1> * Executables : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin ViennaRNA-2.5.1> * Libraries : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ViennaRNA-2.5.1> * Header files : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include ViennaRNA-2.5.1> * Extra Data : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share ViennaRNA-2.5.1> * Man pages : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man ViennaRNA-2.5.1> * Documentation : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> (HTML) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html ViennaRNA-2.5.1> (PDF) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> * Perl5 Interface : ViennaRNA-2.5.1> (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi ViennaRNA-2.5.1> (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0 ViennaRNA-2.5.1> * Python 3.x Interface : ViennaRNA-2.5.1> (binaries) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages ViennaRNA-2.5.1> (scripts) : /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages ViennaRNA-2.5.1> * Python 2.x Interface : Not to be installed python2 executable missing ViennaRNA-2.5.1> (binaries) : ViennaRNA-2.5.1> (scripts) : ViennaRNA-2.5.1> ViennaRNA-2.5.1> You can run 'make', 'make check', and 'make install' now! ViennaRNA-2.5.1> building ViennaRNA-2.5.1> build flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ViennaRNA-2.5.1> make all-recursive ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> Making all in src ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> Making all in ViennaRNA ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> Making all in static ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make all-am ViennaRNA-2.5.1> make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[5]: Nothing to be done for 'all-am'. ViennaRNA-2.5.1> make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> Making all in plotting/naview ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> CC naview.lo ViennaRNA-2.5.1> CCLD libRNA_naview.la ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> CC fold_compound.lo ViennaRNA-2.5.1> CC dist_vars.lo ViennaRNA-2.5.1> CC part_func.lo ViennaRNA-2.5.1> CC part_func_wrappers.lo ViennaRNA-2.5.1> CC pf_fold.lo ViennaRNA-2.5.1> CC pf_multifold.lo ViennaRNA-2.5.1> CC treedist.lo ViennaRNA-2.5.1> CC inverse.lo ViennaRNA-2.5.1> CC ProfileDist.lo ViennaRNA-2.5.1> CC RNAstruct.lo ViennaRNA-2.5.1> CC mfe.lo ViennaRNA-2.5.1> CC mfe_window.lo ViennaRNA-2.5.1> CC mfe_wrappers.lo ViennaRNA-2.5.1> CC mfe_window_wrappers.lo ViennaRNA-2.5.1> CC fold.lo ViennaRNA-2.5.1> CC stringdist.lo ViennaRNA-2.5.1> CC subopt.lo ViennaRNA-2.5.1> CC subopt_zuker.lo ViennaRNA-2.5.1> CC Lfold.lo ViennaRNA-2.5.1> CC cofold.lo ViennaRNA-2.5.1> CC part_func_co.lo ViennaRNA-2.5.1> CC ProfileAln.lo ViennaRNA-2.5.1> CC duplex.lo ViennaRNA-2.5.1> CC alifold.lo ViennaRNA-2.5.1> CC alipfold.lo ViennaRNA-2.5.1> CC LPfold.lo ViennaRNA-2.5.1> CC part_func_up.lo ViennaRNA-2.5.1> CC ribo.lo ViennaRNA-2.5.1> CC MEA.lo ViennaRNA-2.5.1> CC mm.lo ViennaRNA-2.5.1> CC 2Dfold.lo ViennaRNA-2.5.1> CC 2Dpfold.lo ViennaRNA-2.5.1> CC plex_functions.lo ViennaRNA-2.5.1> CC ali_plex.lo ViennaRNA-2.5.1> CC c_plex.lo ViennaRNA-2.5.1> CC plex.lo ViennaRNA-2.5.1> CC snofold.lo ViennaRNA-2.5.1> CC snoop.lo ViennaRNA-2.5.1> CC gquad.lo ViennaRNA-2.5.1> CC perturbation_fold.lo ViennaRNA-2.5.1> CC centroid.lo ViennaRNA-2.5.1> CC model.lo ViennaRNA-2.5.1> CC dp_matrices.lo ViennaRNA-2.5.1> CC boltzmann_sampling.lo ViennaRNA-2.5.1> CC bs_wrappers.lo ViennaRNA-2.5.1> CC equilibrium_probs.lo ViennaRNA-2.5.1> CXX ../libsvm-3.25/svm.lo ViennaRNA-2.5.1> CC ../json/json.lo ViennaRNA-2.5.1> CC alphabet.lo ViennaRNA-2.5.1> CC sequence.lo ViennaRNA-2.5.1> CC unstructured_domains.lo ViennaRNA-2.5.1> CC grammar.lo ViennaRNA-2.5.1> CC heat_capacity.lo ViennaRNA-2.5.1> CC zscore.lo ViennaRNA-2.5.1> CC libRNA_concentrations_la-concentrations.lo ViennaRNA-2.5.1> CXX ../dlib-19.23/dlib/all/libRNA_concentrations_la-source.lo ViennaRNA-2.5.1> CXX libRNA_concentrations_la-wrap_dlib.lo ViennaRNA-2.5.1> CXXLD libRNA_concentrations.la ViennaRNA-2.5.1> CC constraints/constraints.lo ViennaRNA-2.5.1> CC constraints/SHAPE.lo ViennaRNA-2.5.1> CC constraints/hard.lo ViennaRNA-2.5.1> CC constraints/soft.lo ViennaRNA-2.5.1> CC constraints/ligand.lo ViennaRNA-2.5.1> CCLD libRNA_constraints.la ViennaRNA-2.5.1> CC datastructures/basic_datastructures.lo ViennaRNA-2.5.1> CC datastructures/lists.lo ViennaRNA-2.5.1> CC datastructures/char_stream.lo ViennaRNA-2.5.1> CC datastructures/stream_output.lo ViennaRNA-2.5.1> CC datastructures/hash_tables.lo ViennaRNA-2.5.1> CC datastructures/heap.lo ViennaRNA-2.5.1> CCLD libRNA_datastructures.la ViennaRNA-2.5.1> CC utils/utils.lo ViennaRNA-2.5.1> CC utils/string_utils.lo ViennaRNA-2.5.1> CC utils/structure_utils.lo ViennaRNA-2.5.1> CC utils/structure_tree.lo ViennaRNA-2.5.1> CC utils/msa_utils.lo ViennaRNA-2.5.1> CC utils/higher_order_functions.lo ViennaRNA-2.5.1> CC utils/cpu.lo ViennaRNA-2.5.1> CC utils/units.lo ViennaRNA-2.5.1> CC io/io_utils.lo ViennaRNA-2.5.1> CC io/file_formats.lo ViennaRNA-2.5.1> CC io/file_formats_msa.lo ViennaRNA-2.5.1> CC search/BoyerMoore.lo ViennaRNA-2.5.1> CC commands.lo ViennaRNA-2.5.1> CC combinatorics.lo ViennaRNA-2.5.1> CC utils/svm_utils.lo ViennaRNA-2.5.1> CCLD libRNA_utils.la ViennaRNA-2.5.1> CC plotting/alignments.lo ViennaRNA-2.5.1> CC plotting/layouts.lo ViennaRNA-2.5.1> CC plotting/probabilities.lo ViennaRNA-2.5.1> CC plotting/structures.lo ViennaRNA-2.5.1> CC plotting/plot_utils.lo ViennaRNA-2.5.1> CC plotting/RNApuzzler/RNApuzzler.lo ViennaRNA-2.5.1> CC plotting/RNApuzzler/RNAturtle.lo ViennaRNA-2.5.1> CCLD libRNA_plotting.la ViennaRNA-2.5.1> CC params/io.lo ViennaRNA-2.5.1> CC params/default.lo ViennaRNA-2.5.1> CC params/params.lo ViennaRNA-2.5.1> CC params/convert.lo ViennaRNA-2.5.1> CCLD libRNA_params.la ViennaRNA-2.5.1> CC eval.lo ViennaRNA-2.5.1> CC eval_covariance.lo ViennaRNA-2.5.1> CC eval_wrappers.lo ViennaRNA-2.5.1> CCLD libRNA_eval.la ViennaRNA-2.5.1> CC loops/external.lo ViennaRNA-2.5.1> CC loops/external_bt.lo ViennaRNA-2.5.1> CC loops/external_pf.lo ViennaRNA-2.5.1> CC loops/hairpin.lo ViennaRNA-2.5.1> CC loops/hairpin_bt.lo ViennaRNA-2.5.1> CC loops/hairpin_pf.lo ViennaRNA-2.5.1> CC loops/internal.lo ViennaRNA-2.5.1> CC loops/internal_bt.lo ViennaRNA-2.5.1> CC loops/internal_pf.lo ViennaRNA-2.5.1> CC loops/multibranch.lo ViennaRNA-2.5.1> CC loops/multibranch_bt.lo ViennaRNA-2.5.1> CC loops/multibranch_pf.lo ViennaRNA-2.5.1> CCLD libRNA_loops.la ViennaRNA-2.5.1> CC move_set.lo ViennaRNA-2.5.1> CC landscape/move.lo ViennaRNA-2.5.1> CC landscape/findpath.lo ViennaRNA-2.5.1> CC landscape/neighbor.lo ViennaRNA-2.5.1> CC landscape/walk.lo ViennaRNA-2.5.1> CCLD libRNA_landscape.la ViennaRNA-2.5.1> CXXLD libRNA_conv.la ViennaRNA-2.5.1> CXXLD libRNA.la ViennaRNA-2.5.1> CC special_const.lo ViennaRNA-2.5.1> CC ugly_bt.lo ViennaRNA-2.5.1> CCLD libRNA_special_const.la ViennaRNA-2.5.1> GEN libRNA.a ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> Making all in bin ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> CC RNAfold_cmdl.o ViennaRNA-2.5.1> CC RNAfold.o ViennaRNA-2.5.1> CC input_id_helpers.lo ViennaRNA-2.5.1> CC parallel_helpers.lo ViennaRNA-2.5.1> CC ../cthreadpool/thpool.lo ViennaRNA-2.5.1> CCLD libhelpers.la ViennaRNA-2.5.1> CCLD RNAfold ViennaRNA-2.5.1> CC RNAeval_cmdl.o ViennaRNA-2.5.1> CC RNAeval.o ViennaRNA-2.5.1> CCLD RNAeval ViennaRNA-2.5.1> CC RNAheat_cmdl.o ViennaRNA-2.5.1> CC RNAheat.o ViennaRNA-2.5.1> CCLD RNAheat ViennaRNA-2.5.1> CC RNApdist_cmdl.o ViennaRNA-2.5.1> CC RNApdist.o ViennaRNA-2.5.1> CCLD RNApdist ViennaRNA-2.5.1> CC RNAdistance_cmdl.o ViennaRNA-2.5.1> CC RNAdistance.o ViennaRNA-2.5.1> CCLD RNAdistance ViennaRNA-2.5.1> CC RNAinverse_cmdl.o ViennaRNA-2.5.1> CC RNAinverse.o ViennaRNA-2.5.1> CCLD RNAinverse ViennaRNA-2.5.1> CC RNAplot_cmdl.o ViennaRNA-2.5.1> CC RNAplot.o ViennaRNA-2.5.1> CCLD RNAplot ViennaRNA-2.5.1> CC RNAsubopt_cmdl.o ViennaRNA-2.5.1> CC RNAsubopt.o ViennaRNA-2.5.1> CCLD RNAsubopt ViennaRNA-2.5.1> CC RNALfold_cmdl.o ViennaRNA-2.5.1> CC RNALfold.o ViennaRNA-2.5.1> CCLD RNALfold ViennaRNA-2.5.1> CC RNAcofold_cmdl.o ViennaRNA-2.5.1> CC RNAcofold.o ViennaRNA-2.5.1> CCLD RNAcofold ViennaRNA-2.5.1> CC RNApaln_cmdl.o ViennaRNA-2.5.1> CC RNApaln.o ViennaRNA-2.5.1> CCLD RNApaln ViennaRNA-2.5.1> CC RNAduplex_cmdl.o ViennaRNA-2.5.1> CC RNAduplex.o ViennaRNA-2.5.1> CCLD RNAduplex ViennaRNA-2.5.1> CC RNAalifold_cmdl.o ViennaRNA-2.5.1> CC RNAalifold.o ViennaRNA-2.5.1> CCLD RNAalifold ViennaRNA-2.5.1> CC RNAplfold_cmdl.o ViennaRNA-2.5.1> CC RNAplfold.o ViennaRNA-2.5.1> CCLD RNAplfold ViennaRNA-2.5.1> CC RNAup_cmdl.o ViennaRNA-2.5.1> CC RNAup.o ViennaRNA-2.5.1> CCLD RNAup ViennaRNA-2.5.1> CC RNAaliduplex_cmdl.o ViennaRNA-2.5.1> CC RNAaliduplex.o ViennaRNA-2.5.1> CCLD RNAaliduplex ViennaRNA-2.5.1> CC RNALalifold_cmdl.o ViennaRNA-2.5.1> CC RNALalifold.o ViennaRNA-2.5.1> CCLD RNALalifold ViennaRNA-2.5.1> CC RNA2Dfold_cmdl.o ViennaRNA-2.5.1> CC RNA2Dfold.o ViennaRNA-2.5.1> CCLD RNA2Dfold ViennaRNA-2.5.1> CC RNAparconv_cmdl.o ViennaRNA-2.5.1> CC RNAparconv.o ViennaRNA-2.5.1> CCLD RNAparconv ViennaRNA-2.5.1> CC RNAPKplex_cmdl.o ViennaRNA-2.5.1> CC RNAPKplex.o ViennaRNA-2.5.1> CCLD RNAPKplex ViennaRNA-2.5.1> CC RNAplex_cmdl.o ViennaRNA-2.5.1> CC RNAplex.o ViennaRNA-2.5.1> CCLD RNAplex ViennaRNA-2.5.1> CC RNAsnoop_cmdl.o ViennaRNA-2.5.1> CC RNAsnoop.o ViennaRNA-2.5.1> CCLD RNAsnoop ViennaRNA-2.5.1> CC RNApvmin_cmdl.o ViennaRNA-2.5.1> CC RNApvmin.o ViennaRNA-2.5.1> CCLD RNApvmin ViennaRNA-2.5.1> CC RNAdos_cmdl.o ViennaRNA-2.5.1> CC RNAdos.o ViennaRNA-2.5.1> CCLD RNAdos ViennaRNA-2.5.1> CC RNAmultifold_cmdl.o ViennaRNA-2.5.1> CC RNAmultifold.o ViennaRNA-2.5.1> CCLD RNAmultifold ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> Making all in Utils ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> CC b2ct.o ViennaRNA-2.5.1> CCLD b2ct ViennaRNA-2.5.1> CC popt.o ViennaRNA-2.5.1> CCLD popt ViennaRNA-2.5.1> CC ct2db_cmdl.o ViennaRNA-2.5.1> CC ct2db.o ViennaRNA-2.5.1> CCLD ct2db ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> Making all in Cluster ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> CC split.o ViennaRNA-2.5.1> CC distance_matrix.o ViennaRNA-2.5.1> CC cluster.o ViennaRNA-2.5.1> CC treeplot.o ViennaRNA-2.5.1> CC AD_main.o ViennaRNA-2.5.1> CCLD AnalyseDists ViennaRNA-2.5.1> CC statgeom.o ViennaRNA-2.5.1> CC AS_main.o ViennaRNA-2.5.1> CC PS3D.o ViennaRNA-2.5.1> CCLD AnalyseSeqs ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'all-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> Making all in man ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> Making all in misc ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> Making all in doc ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> Making all in CLA ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'all-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> Making all in RNA-Tutorial ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> Making all in interfaces ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> Making all in Perl ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> CXX RNA_la-RNA_wrap.lo ViennaRNA-2.5.1> CXXLD RNA.la ViennaRNA-2.5.1> GEN auto/RNA/RNA.so ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> Making all in Python ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> CXX _RNA_la-RNA_wrap.lo ViennaRNA-2.5.1> CXXLD _RNA.la ViennaRNA-2.5.1> GEN RNA/__init__.py ViennaRNA-2.5.1> GEN RNA/_RNA.cpython-310-aarch64-linux-gnu.so ViennaRNA-2.5.1> GEN RNA/__pycache__/__init__.cpython-310.pyc ViennaRNA-2.5.1> GEN RNA/__pycache__/__init__.cpython-310.opt-1.pyc ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'all-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> Making all in src/Kinfold ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make all-recursive ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> Making all in Example ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> CC baum.o ViennaRNA-2.5.1> CC cache.o ViennaRNA-2.5.1> CC globals.o ViennaRNA-2.5.1> globals.c: In function 'process_options_gg': ViennaRNA-2.5.1> globals.c:358:41: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> 359 | &GAV.phi_bounds[0], ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> globals.c:358:44: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> 359 | &GAV.phi_bounds[0], ViennaRNA-2.5.1> 360 | &GAV.phi_bounds[1], ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> globals.c:358:47: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 358 | if (sscanf(args_info.pbounds_arg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> ...... ViennaRNA-2.5.1> 361 | &GAV.phi_bounds[2]) == 0) ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> globals.c: In function 'process_options': ViennaRNA-2.5.1> globals.c:448:25: warning: format '%g' expects argument of type 'float *', but argument 3 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 448 | if (sscanf(optarg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> 449 | &GAV.phi_bounds[0], ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> globals.c:448:28: warning: format '%g' expects argument of type 'float *', but argument 4 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 448 | if (sscanf(optarg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> 449 | &GAV.phi_bounds[0], ViennaRNA-2.5.1> 450 | &GAV.phi_bounds[1], ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> globals.c:448:31: warning: format '%g' expects argument of type 'float *', but argument 5 has type 'double *' [-Wformat=] ViennaRNA-2.5.1> 448 | if (sscanf(optarg, "%g=%g=%g", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | float * ViennaRNA-2.5.1> | %lg ViennaRNA-2.5.1> ...... ViennaRNA-2.5.1> 451 | &GAV.phi_bounds[2]) == 0) ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | double * ViennaRNA-2.5.1> CC main.o ViennaRNA-2.5.1> CC nachbar.o ViennaRNA-2.5.1> nachbar.c: In function 'sel_nb': ViennaRNA-2.5.1> nachbar.c:318:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] ViennaRNA-2.5.1> 318 | sprintf(format, "%%-%ds %%6.2f %%10.3f", strlen(GAV.farbe_full)+1); ViennaRNA-2.5.1> | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | | ViennaRNA-2.5.1> | int size_t {aka long unsigned int} ViennaRNA-2.5.1> | %ld ViennaRNA-2.5.1> CC cmdline.o ViennaRNA-2.5.1> CCLD Kinfold ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> Making all in src/RNAforester ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make all-recursive ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> Making all in g2-0.72 ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_device.c -o src/g2_device.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_control.c -o src/g2_ui_control.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_util.c -o src/g2_util.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_fif.c -o src/g2_fif.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_virtual_device.c -o src/g2_virtual_device.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_physical_device.c -o src/g2_physical_device.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_graphic_pd.c -o src/g2_graphic_pd.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_control_pd.c -o src/g2_control_pd.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_graphic.c -o src/g2_ui_graphic.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_virtual_device.c -o src/g2_ui_virtual_device.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_ui_device.c -o src/g2_ui_device.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/g2_splines.c -o src/g2_splines.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/PS/g2_PS.c -o src/PS/g2_PS.o ViennaRNA-2.5.1> gcc -I./src -g -O2 -I/usr/local/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DLINUX=1 -DX_DISPLAY_MISSING=1 -DDO_PS=1 -DDO_FIG=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -c src/FIG/g2_FIG.c -o src/FIG/g2_FIG.o ViennaRNA-2.5.1> src/FIG/g2_FIG.c: In function 'g2_FIG_draw_string': ViennaRNA-2.5.1> src/FIG/g2_FIG.c:477:47: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] ViennaRNA-2.5.1> 477 | fprintf(fig->fp,"4 0 %d 1 -1 0 %d 0 5 %d %d %d %d ", ViennaRNA-2.5.1> | ~^ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | int ViennaRNA-2.5.1> | %ld ViennaRNA-2.5.1> 478 | fig->pen_color, fig->font_size, fig->font_size, fig->font_size*strlen(text), x, y); ViennaRNA-2.5.1> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ViennaRNA-2.5.1> | | ViennaRNA-2.5.1> | size_t {aka long unsigned int} ViennaRNA-2.5.1> gcc-ar cr libg2.a ./src/g2_device.o ./src/g2_ui_control.o ./src/g2_util.o ./src/g2_fif.o ./src/g2_virtual_device.o ./src/g2_physical_device.o ./src/g2_graphic_pd.o ./src/g2_control_pd.o ./src/g2_ui_graphic.o ./src/g2_ui_virtual_device.o ./src/g2_ui_device.o ./src/g2_splines.o ./src/PS/g2_PS.o ./src/FIG/g2_FIG.o ViennaRNA-2.5.1> test ! -n "gcc-ranlib" || gcc-ranlib libg2.a ViennaRNA-2.5.1> test -d ./include || mkdir ./include ViennaRNA-2.5.1> cp ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ./include/ ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' ViennaRNA-2.5.1> Making all in src ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make all-am ViennaRNA-2.5.1> make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> CXX anchors/bplex.o ViennaRNA-2.5.1> CXX anchors/shape.o ViennaRNA-2.5.1> CXX anchors/anchors.o ViennaRNA-2.5.1> CXX aligner.o ViennaRNA-2.5.1> CXX main.o ViennaRNA-2.5.1> CXX forestbase.o ViennaRNA-2.5.1> CXX parser.o ViennaRNA-2.5.1> CXX progressive_align.o ViennaRNA-2.5.1> CXX rna_profile_alignment.o ViennaRNA-2.5.1> CXX rna_alignment.o ViennaRNA-2.5.1> CXX rna_algebra.o ViennaRNA-2.5.1> CXX rna_alphabet.o ViennaRNA-2.5.1> CXX rnaforest.o ViennaRNA-2.5.1> CXX rnafuncs.o ViennaRNA-2.5.1> CXX frontend/Arguments.o ViennaRNA-2.5.1> CXX frontend/rnaforester_options.o ViennaRNA-2.5.1> CXX TED/rnaforestsz.o ViennaRNA-2.5.1> CC wmatch/glib.o ViennaRNA-2.5.1> CC wmatch/wmatch.o ViennaRNA-2.5.1> CXXLD RNAforester ViennaRNA-2.5.1> make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> Making all in man ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> Making all in src/Kinwalker ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make all-recursive ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> Making all in man ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> CXX main.o ViennaRNA-2.5.1> CXX Energy.o ViennaRNA-2.5.1> CXX MorganHiggs.o ViennaRNA-2.5.1> CXX Node.o ViennaRNA-2.5.1> CC options.o ViennaRNA-2.5.1> CXX Util.o ViennaRNA-2.5.1> CXXLD kinwalker ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> Making all in src/RNAlocmin ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> make all-am ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> CC RNAlocmin_cmdline.o ViennaRNA-2.5.1> CXX barrier_tree.o ViennaRNA-2.5.1> CXX findpath_pk.o ViennaRNA-2.5.1> CXX flood.o ViennaRNA-2.5.1> CXX globals.o ViennaRNA-2.5.1> CXX hash_util.o ViennaRNA-2.5.1> CXX main.o ViennaRNA-2.5.1> CC move_set_inside.o ViennaRNA-2.5.1> CXX move_set_pk.o ViennaRNA-2.5.1> CXX neighbourhood.o ViennaRNA-2.5.1> CXX pknots.o ViennaRNA-2.5.1> CXX RNAlocmin.o ViennaRNA-2.5.1> CXX treeplot.o ViennaRNA-2.5.1> CXXLD RNAlocmin ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> Making all in tests ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make all-am ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'all-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> Making all in examples ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> Making all in packaging/macosx ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'all'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> buildPhase completed in 27 minutes 34 seconds ViennaRNA-2.5.1> installing ViennaRNA-2.5.1> install flags: SHELL=/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash install ViennaRNA-2.5.1> Making install in src ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> Making install in ViennaRNA ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> Making install in static ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make install-am ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[5]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[5]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[5]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[5]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/static' ViennaRNA-2.5.1> Making install in plotting/naview ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 naview.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA/plotting/naview' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c libRNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.la ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/libRNA.a /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a ViennaRNA-2.5.1> libtool: install: chmod 644 /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a ViennaRNA-2.5.1> libtool: install: gcc-ranlib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/libRNA.a ViennaRNA-2.5.1> libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> Libraries have been installed in: ViennaRNA-2.5.1> /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ViennaRNA-2.5.1> ViennaRNA-2.5.1> If you ever happen to want to link against installed libraries ViennaRNA-2.5.1> in a given directory, LIBDIR, you must either use libtool, and ViennaRNA-2.5.1> specify the full pathname of the library, or use the '-LLIBDIR' ViennaRNA-2.5.1> flag during linking and do at least one of the following: ViennaRNA-2.5.1> - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable ViennaRNA-2.5.1> during execution ViennaRNA-2.5.1> - add LIBDIR to the 'LD_RUN_PATH' environment variable ViennaRNA-2.5.1> during linking ViennaRNA-2.5.1> - use the '-Wl,-rpath -Wl,LIBDIR' linker flag ViennaRNA-2.5.1> ViennaRNA-2.5.1> See any operating system documentation about shared libraries for ViennaRNA-2.5.1> more information, such as the ld(1) and ld.so(8) manual pages. ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 vrna_config.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 concentrations.h wrap_dlib.h pair_mat.h RNAstruct.h dist_vars.h mfe.h mfe_window.h fold.h part_func.h part_func_window.h pf_multifold.h stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h inverse.h subopt.h subopt_zuker.h cofold.h duplex.h alifold.h part_func_co.h ProfileAln.h LPfold.h Lfold.h part_func_up.h ribo.h findpath.h data_structures.h char_stream.h stream_output.h fold_compound.h MEA.h mm.h loop_energies.h exterior_loops.h hairpin_loops.h interior_loops.h multibranch_loops.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h constraints.h eval.h perturbation_fold.h centroid.h utils.h structure_utils.h string_utils.h aln_util.h model.h dp_matrices.h PS_dot.h plot_structure.h plot_aln.h plot_utils.h plot_layouts.h boltzmann_sampling.h equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h constraints_hard.h constraints_soft.h alphabet.h sequence.h grammar.h structured_domains.h unstructured_domains.h file_utils.h file_formats.h file_formats_msa.h energy_par.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 energy_const.h params.h read_epars.h convert_epars.h commands.h units.h combinatorics.h neighbor.h walk.h heat_capacity.h svm_utils.h ../libsvm-3.25/svm.h ../json/json.h naview.h zscore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 constraints/basic.h constraints/ligand.h constraints/SHAPE.h constraints/hard.h constraints/soft.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/constraints' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 datastructures/basic.h datastructures/lists.h datastructures/char_stream.h datastructures/stream_output.h datastructures/hash_tables.h datastructures/heap.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/datastructures' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 io/utils.h io/file_formats.h io/file_formats_msa.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/io' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 landscape/paths.h landscape/findpath.h landscape/neighbor.h landscape/walk.h landscape/move.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/landscape' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 loops/all.h loops/external.h loops/hairpin.h loops/internal.h loops/multibranch.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/loops' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 params/default.h params/constants.h params/basic.h params/io.h params/convert.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/params' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/alignments.h plotting/layouts.h plotting/probabilities.h plotting/structures.h plotting/utils.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 plotting/RNApuzzler/RNApuzzler.h plotting/RNApuzzler/RNAturtle.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/plotting/RNApuzzler' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 search/BoyerMoore.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/search' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 utils/basic.h utils/strings.h utils/structures.h utils/alignments.h utils/higher_order_functions.h utils/cpu.h utils/units.h utils/svm.h '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include/ViennaRNA/utils' ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/ViennaRNA' ViennaRNA-2.5.1> Making install in bin ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold RNAparconv RNAPKplex RNAplex RNAsnoop RNApvmin RNAdos RNAmultifold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAeval /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAheat /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApdist /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdistance /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAinverse /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplot /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsubopt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAcofold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApaln /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAup /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAaliduplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNALalifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA2Dfold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAparconv /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAPKplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAplex /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAsnoop /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNApvmin /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAdos /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAmultifold /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/bin' ViennaRNA-2.5.1> Making install in Utils ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct popt ct2db '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2ct /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c popt /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c ct2db /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c b2mt.pl dpzoom.pl mountain.pl relplot.pl rotate_ss.pl cmount.pl coloraln.pl refold.pl switch.pl RNAdesign.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/bin' ViennaRNA-2.5.1> make install-data-hook ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> GEN install-data-hook ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Utils' ViennaRNA-2.5.1> Making install in Cluster ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists AnalyseSeqs '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseDists /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c AnalyseSeqs /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 AnalyseDists.1 AnalyseSeqs.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Cluster' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src' ViennaRNA-2.5.1> Making install in man ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib.info '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/info' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA2Dfold.1 RNAaliduplex.1 RNAalifold.1 RNAcofold.1 RNAduplex.1 RNAeval.1 RNAfold.1 RNAheat.1 RNAinverse.1 RNALalifold.1 RNALfold.1 RNAmultifold.1 RNApaln.1 RNAparconv.1 RNAplfold.1 RNAplot.1 RNApvmin.1 RNAsubopt.1 RNAup.1 RNAPKplex.1 RNAsnoop.1 RNAplex.1 RNAdistance.1 RNApdist.1 RNAdos.1 ct2db.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/man' ViennaRNA-2.5.1> Making install in misc ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 2Dlandscape_mfe.gri 2Dlandscape_pf.gri rna_turner1999.par rna_turner2004.par rna_andronescu2007.par dna_mathews1999.par dna_mathews2004.par rna_langdon2018.par rna_misc_special_hairpins.par 2Dlandscape.R '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/misc' ViennaRNA-2.5.1> Making install in doc ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> Making install in CLA ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \ ViennaRNA-2.5.1> test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ ViennaRNA-2.5.1> done ViennaRNA-2.5.1> test -f ./ViennaRNA-CLA-Individual.pdf || ln -s ./ViennaRNA-CLA-Individual.pdf ./ViennaRNA-CLA-Individual.pdf ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Individual.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> { test ! -h ./ViennaRNA-CLA-Individual.pdf || rm -f ./ViennaRNA-CLA-Individual.pdf; } ViennaRNA-2.5.1> test -f ./ViennaRNA-CLA-Entity.pdf || ln -s ./ViennaRNA-CLA-Entity.pdf ./ViennaRNA-CLA-Entity.pdf ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./ViennaRNA-CLA-Entity.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> { test ! -h ./ViennaRNA-CLA-Entity.pdf || rm -f ./ViennaRNA-CLA-Entity.pdf; } ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> Making installdirs in CLA ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA"; do \ ViennaRNA-2.5.1> test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ ViennaRNA-2.5.1> done ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA"; do \ ViennaRNA-2.5.1> test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ ViennaRNA-2.5.1> done ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> Making html in CLA ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'html'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc/CLA' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'html-am'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> test -d ./html || ln -s ./html ./html ViennaRNA-2.5.1> { for i in ./html/*; do cp -r "$i" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html/"; done } ViennaRNA-2.5.1> { for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/*; do test -f "$i" && chmod 644 "$i"; done } ViennaRNA-2.5.1> chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" ViennaRNA-2.5.1> { for i in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search/*; do test -f "$i" && chmod 644 "$i"; done } ViennaRNA-2.5.1> chmod 755 "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html"/search ViennaRNA-2.5.1> { test ! -h ./html || rm -f ./html; } ViennaRNA-2.5.1> test -f ./RNAlib-2.5.1.pdf || ln -s ./RNAlib-2.5.1.pdf ./RNAlib-2.5.1.pdf ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNAlib-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> { test ! -h ./RNAlib-2.5.1.pdf || rm -f ./RNAlib-2.5.1.pdf; } ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 viennarna.bib DoxygenLayout.xml '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/doc' ViennaRNA-2.5.1> Making install in RNA-Tutorial ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> for dir in "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA/html" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human" "/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x"; do \ ViennaRNA-2.5.1> test -z "$dir" || /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p "$dir"; \ ViennaRNA-2.5.1> done ViennaRNA-2.5.1> test -f ./RNA-tutorial-2.5.1.pdf || ln -s ./RNA-tutorial-2.5.1.pdf ./RNA-tutorial-2.5.1.pdf ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./RNA-tutorial-2.5.1.pdf /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/doc/ViennaRNA ViennaRNA-2.5.1> { test ! -h ./RNA-tutorial-2.5.1.pdf || rm -f ./RNA-tutorial-2.5.1.pdf; } ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/alifoldz/miRNA.aln ./Data/alifoldz/unknown.aln '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/alifoldz' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/5S.seq ./Data/duplex.seq ./Data/FOO.seq ./Data/four.seq ./Data/RNaseP.seq ./Data/RybB.seq ./Data/t.seq ./Data/dot.emacs ./Data/RNaseP.aln ./Data/RNaseP.dnd '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/programs/alifoldz_adopted.tar.gz '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/programs' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/qrna/coding.fa ./Data/qrna/tRNA.fa '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/qrna' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/IRE.aln ./Data/rnaz/snoRNA.aln ./Data/rnaz/tRNA.aln ./Data/rnaz/unknown.aln ./Data/rnaz/miRNA.maf ./Data/rnaz/tRNA.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/annotation.bed ./Data/rnaz/herpes/NC_004367 ./Data/rnaz/herpes/NC_006146 ./Data/rnaz/herpes/NC_007605 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/herpes/x/annotation.bed ./Data/rnaz/herpes/x/NC_006146.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_006146.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_004367.sing.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.orig.maf ./Data/rnaz/herpes/x/NC_007605.NC_006146.sing.maf ./Data/rnaz/herpes/x/final.maf ./Data/rnaz/herpes/x/random.maf ./Data/rnaz/herpes/x/raw-tba.maf ./Data/rnaz/herpes/x/windows.maf ./Data/rnaz/herpes/x/windows_random.maf ./Data/rnaz/herpes/x/results.dat ./Data/rnaz/herpes/x/results_annotated.dat ./Data/rnaz/herpes/x/results_random.dat ./Data/rnaz/herpes/x/rnaz.out ./Data/rnaz/herpes/x/rnaz_random.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/herpes/x' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/annotation.bed '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 ./Data/rnaz/human/x/annotation.bed ./Data/rnaz/human/x/prediction.bed ./Data/rnaz/human/x/region.maf ./Data/rnaz/human/x/windows.maf ./Data/rnaz/human/x/results.dat ./Data/rnaz/human/x/results_annotated.dat ./Data/rnaz/human/x/rnaz.out '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/tutorial/rnaz/human/x' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/RNA-Tutorial' ViennaRNA-2.5.1> Making install in interfaces ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> Making install in Perl ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/Benchmark.pm RNA/Design.pm RNA/Files.pm RNA/Reliability.pm RNA/Utils.pm RNA/Params.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/RNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA.pm '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/.' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la ViennaRNA-2.5.1> libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> Libraries have been installed in: ViennaRNA-2.5.1> /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA ViennaRNA-2.5.1> ViennaRNA-2.5.1> If you ever happen to want to link against installed libraries ViennaRNA-2.5.1> in a given directory, LIBDIR, you must either use libtool, and ViennaRNA-2.5.1> specify the full pathname of the library, or use the '-LLIBDIR' ViennaRNA-2.5.1> flag during linking and do at least one of the following: ViennaRNA-2.5.1> - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable ViennaRNA-2.5.1> during execution ViennaRNA-2.5.1> - add LIBDIR to the 'LD_RUN_PATH' environment variable ViennaRNA-2.5.1> during linking ViennaRNA-2.5.1> - use the '-Wl,-rpath -Wl,LIBDIR' linker flag ViennaRNA-2.5.1> ViennaRNA-2.5.1> See any operating system documentation about shared libraries for ViennaRNA-2.5.1> more information, such as the ld(1) and ld.so(8) manual pages. ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> make install-data-hook ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.la ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Perl' ViennaRNA-2.5.1> Making install in Python ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__init__.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' ViennaRNA-2.5.1> /nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin/bash ../../libtool --mode=install /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c _RNA.la '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA' ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.cpython-310-aarch64-linux-gnu.so /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so ViennaRNA-2.5.1> libtool: install: /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c .libs/_RNA.lai /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la ViennaRNA-2.5.1> libtool: finish: PATH="/nix/store/f07wx5pf7hrfcpcwji907bpzvh0sb7fi-patchelf-0.15.0/bin:/nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin:/nix/store/l158mg1n8wsszksa9rlhqg8gylg4238b-gcc-9.5.0/bin:/nix/store/sh4mzx5ghnxgs171nfrv46fwzh6aibh1-glibc-2.35-224-bin/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/zkmzlvmlizm1jqjygc69469pfai2jpfp-binutils-wrapper-2.39/bin:/nix/store/cwivsnh1p591x7yydynrz0xc1zcq54p3-binutils-2.39/bin:/nix/store/xmbyjjf8yk012i2jla8ycy068hyw6dms-gsl-2.7.1/bin:/nix/store/qjkhzhzav2bkifw5kis91ckzv9sjjpj7-perl-5.36.0/bin:/nix/store/ar76b3831ydkmfhf0r9v3wbma5i61iz2-python3-3.10.9/bin:/nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin:/nix/store/25rjgwbcy2xarfwyrx65a5lcx7g6j4mr-findutils-4.9.0/bin:/nix/store/iw3lv41w3kzgw9r21y0cfihdhhrax2n9-diffutils-3.8/bin:/nix/store/kr6p5jwckmfyqk6pay22b8palxpil81l-gnused-4.8/bin:/nix/store/7zdwjc66k8q18dszbfjl6djg11gjhqis-gnugrep-3.7/bin:/nix/store/b9i4h55fq5vrlb7b6an990c57njgpiar-gawk-5.1.1/bin:/nix/store/1b851qrzgb9l1sf8w35l452p75yhl1rm-gnutar-1.34/bin:/nix/store/xgm1prhav93k4a8w6hkc0ri7kk5gx5x3-gzip-1.12/bin:/nix/store/bm3dyywkvqq2k086426agvlqs7dhafa6-bzip2-1.0.8-bin/bin:/nix/store/6sl0rn606afqrvvf2cd37dl5m5hmnk2n-gnumake-4.4/bin:/nix/store/m45cjiwspshg01wrk2pln2qndasky23r-bash-5.1-p16/bin:/nix/store/225ykw6smvqdv2z9skkafq0sjab70y1w-patch-2.7.6/bin:/nix/store/8ycmad2yfg9cad0d4bz6bffypw4szb4b-xz-5.2.9-bin/bin:/nix/store/9n8bmnam2ywysy3krkn6736d8dywznzz-file-5.43/bin:/sbin" ldconfig -n /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> Libraries have been installed in: ViennaRNA-2.5.1> /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA ViennaRNA-2.5.1> ViennaRNA-2.5.1> If you ever happen to want to link against installed libraries ViennaRNA-2.5.1> in a given directory, LIBDIR, you must either use libtool, and ViennaRNA-2.5.1> specify the full pathname of the library, or use the '-LLIBDIR' ViennaRNA-2.5.1> flag during linking and do at least one of the following: ViennaRNA-2.5.1> - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable ViennaRNA-2.5.1> during execution ViennaRNA-2.5.1> - add LIBDIR to the 'LD_RUN_PATH' environment variable ViennaRNA-2.5.1> during linking ViennaRNA-2.5.1> - use the '-Wl,-rpath -Wl,LIBDIR' linker flag ViennaRNA-2.5.1> ViennaRNA-2.5.1> See any operating system documentation about shared libraries for ViennaRNA-2.5.1> more information, such as the ld(1) and ld.so(8) manual pages. ViennaRNA-2.5.1> ---------------------------------------------------------------------- ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNA/__pycache__/__init__.cpython-310.pyc RNA/__pycache__/__init__.cpython-310.opt-1.pyc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/__pycache__' ViennaRNA-2.5.1> make install-data-hook ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> rm -f /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.la ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces/Python' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/interfaces' ViennaRNA-2.5.1> Making install in src/Kinfold ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> Making install in Example ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold/Example' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c Kinfold '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Kinfold.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinfold' ViennaRNA-2.5.1> Making install in src/RNAforester ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> Making install in g2-0.72 ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' ViennaRNA-2.5.1> test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ViennaRNA-2.5.1> test -d //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include || mkdir -p //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 libg2.a //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib ViennaRNA-2.5.1> for IFILE in ./src/g2.h ./src/PS/g2_PS.h ./src/FIG/g2_FIG.h ; do \ ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 $IFILE //nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/include; \ ViennaRNA-2.5.1> done ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/g2-0.72' ViennaRNA-2.5.1> Making install in src ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make install-am ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make[4]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAforester '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> make[4]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[4]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/src' ViennaRNA-2.5.1> Making install in man ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAforester.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester/man' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAforester' ViennaRNA-2.5.1> Making install in src/Kinwalker ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> Making install in man ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 kinwalker.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker/man' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c kinwalker '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/Kinwalker' ViennaRNA-2.5.1> Making install in src/RNAlocmin ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c RNAlocmin '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlocmin.1 '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/man1' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/src/RNAlocmin' ViennaRNA-2.5.1> Making install in tests ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make install-am ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[3]: Entering directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[3]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[3]: Leaving directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/tests' ViennaRNA-2.5.1> Making install in examples ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 callback_subopt.c example1.c example_old.c fold_compound_md.c fold_compound_mfe.c helloworld_mfe.c helloworld_mfe_comparative.c helloworld_probabilities.c soft_constraints_up.c '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 files/alignment_clustal.aln files/alignment_fasta.fa files/alignment_stockholm.stk files/alignment_maf.maf '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/data' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Perl5/helloworld_mfe.pl Perl5/helloworld_mfe_comparative.pl Perl5/helloworld_nondefault.pl Perl5/maximum_matching.pl Perl5/oo_example1.pl '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/perl5' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 Python/boltzmann_sampling.py Python/helloworld_mfe_comparative.py Python/helloworld_mfe.py Python/helloworld_nondefault.py Python/maximum_matching.py Python/oo_example1.py Python/subopt.py Python/RNAfold_MEA.py '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/ViennaRNA/examples/python' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/examples' ViennaRNA-2.5.1> Making install in packaging/macosx ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-data-am'. ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1/packaging/macosx' ViennaRNA-2.5.1> make[1]: Entering directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> make[2]: Entering directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> make[2]: Nothing to be done for 'install-exec-am'. ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/mkdir -p '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig' ViennaRNA-2.5.1> /nix/store/wcckxdl0i7k2kxhzj0ii23s6096n40jh-coreutils-9.1/bin/install -c -m 644 RNAlib2.pc '/nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/pkgconfig' ViennaRNA-2.5.1> make[2]: Leaving directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> make[1]: Leaving directory '/build/ViennaRNA-2.5.1' ViennaRNA-2.5.1> post-installation fixup ViennaRNA-2.5.1> shrinking RPATHs of ELF executables and libraries in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/python3.10/site-packages/RNA/_RNA.cpython-310-aarch64-linux-gnu.so ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib/perl5/site_perl/5.36.0/aarch64-linux-thread-multi/auto/RNA/RNA.so ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAfold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAmultifold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseDists ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNA2Dfold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdistance ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAheat ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAcofold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/popt ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/kinwalker ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAinverse ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAeval ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAPKplex ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplex ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApdist ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAup ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAparconv ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAforester ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/AnalyseSeqs ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAalifold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApvmin ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplfold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAlocmin ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/b2ct ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAdos ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/Kinfold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAaliduplex ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsubopt ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALfold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNApaln ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAsnoop ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/ct2db ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNALalifold ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAduplex ViennaRNA-2.5.1> shrinking /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin/RNAplot ViennaRNA-2.5.1> gzipping man pages under /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/share/man/ ViennaRNA-2.5.1> strip is /nix/store/jm6gqq369d0vd9pz3b7swn2vyycygdb9-gcc-wrapper-9.5.0/bin/strip ViennaRNA-2.5.1> stripping (with command strip and flags -S) in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/lib /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1/bin ViennaRNA-2.5.1> patching script interpreter paths in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1 ViennaRNA-2.5.1> checking for references to /build/ in /nix/store/yg1fqac61a7fgx73amysr073glgzahb0-ViennaRNA-2.5.1... upload niks3: ok